Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    65:144 66:143 67:142 68:141 69:140 70:139 71:137 72:136
	Energy of Broken Structure: -96.3
	Energy of Pseudo-Helices:   -13.1
	Pseudoknot Energy Penalty:  9.2
	Total Free Energy:          -100.2
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -3.4
		Stack = -2.4  for stack of 328-389
		Stack = -0.9  for stack of 329-388
		Stack = -2.2  for stack of 330-387
		Stack = -2.1  for stack of 331-386
	Helix total = -7.6
	Internal/bulge = 4.1  for closure of 332-385	Size = 1 BP stack across bulge = 0.3
		Stack = -2.1  for stack of 333-383
		Stack = -2.2  for stack of 334-382
	Helix total = -4.3
	Internal/bulge = 1.2  for closure of 335-381	Size = 2
		Stack = -3.3  for stack of 337-379
	Helix total = -3.3
	Internal/bulge = 5.5  for closure of 338-378	Size = 10
		Stack = -2.2  for stack of 347-375
		Stack = -2.1  for stack of 348-374
		Stack = -2.5  for stack of 349-373
	Helix total = -6.8
	Internal/bulge = 2.3  for closure of 350-372	Size = 1 BP stack across bulge = -1.5
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 351-370	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 353-368	Size = 2
		Stack = -3.3  for stack of 355-366
	Helix total = -3.3
	Hairpin = 3.4  for closure of 356-365
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 171-317	Size = 2
		Stack = -2.4  for stack of 173-315
		Stack = -3.4  for stack of 174-314
		Stack = -2.4  for stack of 175-313
		Stack = -3.3  for stack of 176-312
	Helix total = -11.5
	Internal/bulge = 4.3  for closure of 177-311	Size = 14
		Stack = -3.3  for stack of 183-301
		Stack = -3.4  for stack of 184-300
		Stack = -3.3  for stack of 185-299
	Helix total = -10.0
	Internal/bulge = 2.8  for closure of 186-298	Size = 2
		Stack = -3.4  for stack of 187-295
		Stack = -3.3  for stack of 188-294
		Stack = -3.3  for stack of 189-293
	Helix total = -10.0
	Internal/bulge = 0.9  for closure of 190-292	Size = 1 BP stack across bulge = -2.1
		Stack = -2.1  for stack of 191-290
	Helix total = -2.1
	Internal/bulge = 0.4  for closure of 192-289	Size = 1 BP stack across bulge = -2.5
		Stack = -1.5  for stack of 193-287
		Stack = -3.3  for stack of 194-286
		Stack = -3.3  for stack of 195-285
		Stack = -2.4  for stack of 196-284
	Helix total = -10.5
	Internal/bulge = 2.2  for closure of 197-283	Size = 6
		Stack = -3.3  for stack of 200-278
		Stack = -3.3  for stack of 201-277
		Stack = -2.4  for stack of 202-276
		Stack = -3.4  for stack of 203-275
	Helix total = -12.4
	Multiloop = 5.8  for closure of 204-274
		Stack = -2.1  for stack of 254-266
		Stack = -2.4  for stack of 255-265
		Stack = -2.1  for stack of 256-264
	Helix total = -6.6
	Hairpin = 5.0  for closure of 257-263
		Stack = -2.4  for stack of 213-252
		Stack = -3.4  for stack of 214-251
		Stack = -2.4  for stack of 215-250
		Stack = -3.3  for stack of 216-249
	Helix total = -11.5
	Internal/bulge = -0.9  for closure of 217-248	Size = 1 BP stack across bulge = -3.4
		Stack = -2.4  for stack of 219-247
		Stack = -3.3  for stack of 220-246
		Stack = -3.4  for stack of 221-245
	Helix total = -9.1
	Internal/bulge = 2.6  for closure of 222-244	Size = 5
		Stack = -3.3  for stack of 225-240
		Stack = -1.5  for stack of 226-239
	Helix total = -4.8
	Hairpin = 3.8  for closure of 227-238
		Stack = -3.4  for stack of 22-103
		Stack = -2.1  for stack of 23-102
		Stack = -2.1  for stack of 24-101
		Stack = -2.5  for stack of 25-100
		Stack = 0.3  for stack of 26-99
		Stack = -2.1  for stack of 27-98
		Stack = -3.3  for stack of 28-97
		Stack = -2.2  for stack of 29-96
	Helix total = -17.4
	Internal/bulge = 3.3  for closure of 30-95	Size = 11
		Stack = -2.1  for stack of 37-89
		Stack = -0.9  for stack of 38-88
		Stack = -0.9  for stack of 39-87
	Helix total = -3.9
	Internal/bulge = 5.8  for closure of 40-86	Size = 12
		Stack = -3.4  for stack of 49-81
		Stack = -3.3  for stack of 50-80
		Stack = -3.3  for stack of 51-79
		Stack = -2.4  for stack of 52-78
		Stack = -3.4  for stack of 53-77
		Stack = -2.1  for stack of 54-76
		Stack = -2.1  for stack of 55-75
	Helix total = -20.0
	Hairpin = 6.1  for closure of 56-74


	Total energy = -96.3



