sync -au --exclude=.git/ --exclude=/RELEASE --exclude=*.o --exclude=/tests/*_OUTPUT --exclude=/exe/java --exclude=/exe/java_tests --exclude=/exe/*.log --exclude=/exe/__pycache__ --exclude=/exe/*.pyc --exclude=*.exclude --exclude=old_* --exclude=*.iws --exclude=/java_interface/installer --exclude=/java_interface/docs --exclude=/java_interface/ide/eclipse --exclude=.#* --exclude=*~ --exclude=CVS --exclude=RCS --exclude=SCCS --exclude=.git --exclude=.gitignore --exclude=.cvsignore --exclude=.svn --exclude=cvs.ignore --exclude=.gitattributes --exclude=.gitlab-ci.yml /home/david/RNAstructure-development/RNAstructure/ /home/david/RNAstructure-development/RNAstructure/RELEASE/BUILD_v6.5/RNAstructureSource/RNAstructure
