Tests NOT implemented for GUI:

Fold:
# Test Fold_double_stranded_offset_option.
  testFiles/testFile_U1a.seq @OUT.ct -dso testFiles/testFile_double_offset_dummy.txt
# Test Fold_experimental_pair_bonus_option.
  testFiles/testFile_5SRNA_tail2.seq @OUT.ct -X testFiles/testFile_bonus_matrix.txt
# Test Fold_experimental_pair_bonus_offset_option.
  testFiles/testFile_5SRNA_tail2.seq @OUT.ct -X testFiles/testFile_bonus_matrix.txt -xo 10
# Test Fold_experimental_pair_bonus_scaling_option.
  testFiles/testFile_5SRNA_tail2.seq @OUT.ct -X testFiles/testFile_bonus_matrix.txt -xs 10
# Test Fold_minimum_free_energy_difference_option.
  $SINGLESEQ @OUT.ct -mfe
# Test Fold_single_stranded_offset_option.
 testFiles/testFile_U1a.seq @OUT.ct -sso testFiles/testFile_single_offset.txt
  