ur_rna.StructureEditor.services

Class SceneColorizer.PairProbabilityData

java.lang.Object

ur_rna.StructureEditor.services.SceneColorizer.PairProbabilityData

Enclosing class:

SceneColorizer

public static class SceneColorizer.PairProbabilityData
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
private int	N
private double[]	values

Constructor Summary

Constructors

Constructor and Description
PairProbabilityData(int nucCount)

Method Summary

Modifier and Type	Method and Description
double	getPair(int i, int j) Get the probability of pairing between Nucs I and J.
double	getSingle(int i) Get the probability that Nuc I is single-stranded.
void	setPair(int i, int j, double value) Set the probability of pairing between Nucs I and J.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

N

private int N

values

private double[] values

Constructor Detail

PairProbabilityData

public PairProbabilityData(int nucCount)

Method Detail

getPair

public double getPair(int i,
                      int j)

Get the probability of pairing between Nucs I and J. The indices are assumed to be 0-based.

getSingle

public double getSingle(int i)

Get the probability that Nuc I is single-stranded. This is the same as 1.0 - SUM(getPair(I, J)) for all J != I

setPair

public void setPair(int i,
                    int j,
                    double value)

Set the probability of pairing between Nucs I and J. The indices are assumed to be 0-based.