var searchData=
[
  ['main',['main',['../_dynalign__class_8cpp.html#a0ddf1224851353fc92bfbff6f499fa97',1,'main(int argc, char *argv[]):&#160;Dynalign_class.cpp'],['../_dynalign_s_m_p__class_8cpp.html#a0ddf1224851353fc92bfbff6f499fa97',1,'main(int argc, char *argv[]):&#160;DynalignSMP_class.cpp'],['../_hybrid_r_n_a__class_8cpp.html#a0ddf1224851353fc92bfbff6f499fa97',1,'main(int argc, char *argv[]):&#160;HybridRNA_class.cpp'],['../_oligo_walk__class_8cpp.html#a0ddf1224851353fc92bfbff6f499fa97',1,'main(int argc, char *argv[]):&#160;OligoWalk_class.cpp'],['../_r_n_a__class_8cpp.html#a0ddf1224851353fc92bfbff6f499fa97',1,'main(int argc, char *argv[]):&#160;RNA_class.cpp']]],
  ['mapfragmenttonuc',['MapFragmenttoNuc',['../classdesign.html#a151be9dbf9b6b9592608084330b77aae',1,'design']]],
  ['mapnuctofragment',['MapNuctoFragment',['../classdesign.html#a09b7b28755716aba8efce760461b327b',1,'design']]],
  ['marktree',['marktree',['../classdesign.html#ab37a72382a17a1c24a3dc718ccda8c09',1,'design']]],
  ['max_5finternal_5floop',['max_internal_loop',['../_prob_scan_8cpp.html#a3d429c740682c7288221b034d465f72a',1,'ProbScan.cpp']]],
  ['maxdsv',['maxDsv',['../class_multilign__object.html#afde1c38834e8c2cf14cbe19b43bd2b62',1,'Multilign_object::maxDsv()'],['../class_dynalign__object.html#afdf4fc676f616371f56e4c9fef9df01f',1,'Dynalign_object::MAXDSV()']]],
  ['maximizeexpectedaccuracy',['MaximizeExpectedAccuracy',['../class_r_n_a.html#a61141a694126843efe07081e5918fba7',1,'RNA']]],
  ['maxleafredesign',['MaxLeafRedesign',['../classdesign.html#a77397654c70217096a707aec36c2c242',1,'design']]],
  ['maxmutate',['MaxMutate',['../classdesign.html#a86201fb12e749508165c440e085b0522',1,'design']]],
  ['maxpairs',['maxPairs',['../class_multilign__object.html#af97dd66a553cf0954618aae713312322',1,'Multilign_object']]],
  ['maxredesign',['MaxRedesign',['../classdesign.html#a1e554b256d30f416582faf21e3c0dd1e',1,'design']]],
  ['maxtrace',['Maxtrace',['../class_dynalign__object.html#a26f77a6eaa11a89728b53e96c09d25e5',1,'Dynalign_object']]],
  ['minimumlength',['MINIMUMLENGTH',['../design_8cpp.html#ab0172e89738b987e83dd4769047d0524',1,'design.cpp']]],
  ['mod',['mod',['../class_r_n_a.html#ad7a7258298a689bf42fc43a41a16effb',1,'RNA']]],
  ['modificationflag',['modificationflag',['../class_dynalign__object.html#ad0016552f28504bf8fb4e514d493e68b',1,'Dynalign_object']]],
  ['multibranch_5floop',['multibranch_loop',['../_prob_scan_8cpp.html#af46a1c541448f547f7c090b550cafe89',1,'multibranch_loop(int i, int j):&#160;ProbScan.cpp'],['../_prob_scan_8h.html#af46a1c541448f547f7c090b550cafe89',1,'multibranch_loop(int i, int j):&#160;ProbScan.cpp']]],
  ['multibranch_5floop_5ft',['multibranch_loop_t',['../_prob_scan_8h.html#a3808e068cdf051490ca22e642e46b147',1,'ProbScan.h']]],
  ['multicloseness',['MULTICLOSENESS',['../design_8cpp.html#aee320803e2aec9686d9a2bb894486b47',1,'design.cpp']]],
  ['multifind_5fobject',['Multifind_object',['../class_multifind__object.html',1,'Multifind_object'],['../class_multifind__object.html#aa87b1d02617ecadf74b004510bffc1cb',1,'Multifind_object::Multifind_object()']]],
  ['multifind_5fobject_2ecpp',['Multifind_object.cpp',['../_multifind__object_8cpp.html',1,'']]],
  ['multifind_5fobject_2eh',['Multifind_object.h',['../_multifind__object_8h.html',1,'']]],
  ['multifind_5fpredict',['Multifind_Predict',['../class_multifind__object.html#a2811879180fedf2506f80681c9b79f63',1,'Multifind_object']]],
  ['multilign_5fobject',['Multilign_object',['../class_multilign__object.html',1,'Multilign_object'],['../class_multilign__object.html#a58cb459be62ef7dca1107f564d04ef80',1,'Multilign_object::Multilign_object()'],['../class_multilign__object.html#a808d997d606a38c8e2a46e41d051ea04',1,'Multilign_object::Multilign_object(const vector&lt; vector&lt; string &gt; &gt; &amp;inputlist, const bool isrna=true, ProgressHandler *progress=NULL)'],['../class_multilign__object.html#a2f0388bf1a216f6ce8a46d96a1175ccf',1,'Multilign_object::Multilign_object(const bool Multifind, const string &amp;outputmultifind, const vector&lt; string &gt; &amp;ctfiles, ProgressHandler *progress=NULL, const bool isrna=true)']]],
  ['multilign_5fobject_2ecpp',['Multilign_object.cpp',['../_multilign__object_8cpp.html',1,'']]],
  ['multilign_5fobject_2eh',['Multilign_object.h',['../_multilign__object_8h.html',1,'']]],
  ['multitempmultilign',['MultiTempMultilign',['../class_multilign__object.html#a3a8cc2e2ed3a20d50bf6db0bd34c2dd5',1,'Multilign_object']]],
  ['mutation',['Mutation',['../classdesign.html#ad8b6b807d6248be0e3a8226c15057e41',1,'design']]]
];
