| RNAstructure Classes Version 6.2

### - c -

- CalculateFreeEnergy() : RNA
- CleanupIntermediateFiles() : Multilign_object
- ClearEnergies() : Thermodynamics
- ClearEnthalpies() : Thermodynamics
- closeenoughtocut() : design
- common_energies() : Multifind_object
- CommonConstructor() : Dynalign_object
- commonconstructor() : HybridRNA
- CommonConstructor() : Oligowalk_object
- construct_mb_element_array() : ProbScan
- ContainsPseudoknot() : RNA
- CopyThermo() : RNA , Thermodynamics
- CountBP() : Multilign_object