#This file is auto-generated by `make source-list`. Manual edits may be overwritten.
RNA_class/design.cpp
RNA_class/Dynalign_object.cpp
RNA_class/HybridRNA.cpp
RNA_class/Multilign_object.cpp
RNA_class/Oligowalk_object.cpp
RNA_class/ProbScan.cpp
RNA_class/RNA.cpp
RNA_class/RsampleData.cpp
RNA_class/thermodynamics.cpp
RNA_class/TwoRNA.cpp
src/algorithm.cpp
src/alltrace.cpp
src/alltrace_intermolecular.cpp
src/bimol.cpp
src/common_utils.cpp
src/configfile.cpp
src/dotarray.cpp
src/DotPlotHandler.cpp
src/draw.cpp
src/dynalignarray.cpp
src/dynalign.cpp
src/dynalignheap.cpp
src/dynalignstackclass.cpp
src/DynProgArray.cpp
src/extended_double.cpp
src/forceclass.cpp
src/intermolecular.cpp
src/loop_utils.cpp
src/MaxExpect.cpp
src/MaxExpectStack.cpp
src/observable.cpp
src/observer.cpp
src/OligoScreenCalc.cpp
src/outputconstraints.cpp
src/pclass.cpp
src/pfunction.cpp
src/phmm/aln_env_utils.cpp
src/phmm/p_alignment.cpp
src/phmm/phmm_aln.cpp
src/phmm/phmm_array.cpp
src/phmm/phmm.cpp
src/phmm/phmm_ml_loops.cpp
src/phmm/phmm_pp_loops.cpp
src/phmm/structure/folding_constraints.cpp
src/phmm/structure/structure_object.cpp
src/phmm/utils/ansi_string/ansi_string.cpp
src/phmm/utils/file/utils.cpp
src/phmm/utils/xmath/linear/linear_math.cpp
src/phmm/utils/xmath/log/xlog_math.cpp
src/phmm/utils/xmath/matrix/matrix.cpp
src/probknot.cpp
src/random.cpp
src/rna_library.cpp
src/siRNAfilter.cpp
src/stackclass.cpp
src/stackstruct.cpp
src/stochastic.cpp
src/structure.cpp
src/StructureImageHandler.cpp
src/substructure.cpp
src/thermo.cpp
src/TProgressDialog.cpp
src/varray.cpp
src/wendarray.cpp
TurboFold/Alignment.cpp
TurboFold/GuideTree.cpp
TurboFold/MultiSequence.cpp
TurboFold/ProbabilisticModel.cpp
TurboFold/Sequence.cpp
TurboFold/SparseMatrix.cpp
TurboFold/TurboFold_object.cpp
python_interface/RNAstructure_wrap.cxx
