# Constant Field Values

## Contents

- ur_rna.GUITester.*
- ur_rna.RNAstructure.*
- ur_rna.StructureEditor.*
- ur_rna.Utilities.*

## ur_rna.GUITester.*

- ur_rna.GUITester.ScriptRunner
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final boolean` | `TRACE_PARSE_TREE` | `false`

- ur_rna.GUITester.ur_rna.GUITester.ScriptRuntime
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private final boolean` | `DEBUG_GUI_MATCHER` | `false`

- ur_rna.GUITester.ScriptRuntimeException
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `1L`

- ur_rna.GUITester.GuiTools.GuiItemNotFoundException
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `1L`

- ur_rna.GUITester.GuiTools.GuiRobot
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `DEFAULT_POLL_TIME` | `50`
  `public static final int` | `DEFAULT_TEST_WAIT_TIME` | `250`
  `public static final int` | `DEFAULT_WAIT_TIME` | `2000`

- ur_rna.GUITester.GuiTools.Matchers.DescriptionMatcher
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `SEARCH_ACCESSIBLE` | `7340032`
  `public static final int` | `SEARCH_ACCESSIBLE_DESC` | `4194304`
  `public static final int` | `SEARCH_ACCESSIBLE_NAME` | `1048576`
  `public static final int` | `SEARCH_ACCESSIBLE_TEXT` | `2097152`
  `public static final int` | `SEARCH_ALL` | `-1`
  `public static final int` | `SEARCH_CAPTION` | `4194308`
  `public static final int` | `SEARCH_COMMENT` | `4195328`
  `public static final int` | `SEARCH_INPUT` | `2097154`
  `public static final int` | `SEARCH_NAME` | `5242881`
  `public static final int` | `SEARCH_NONE` | `0`
  `public static final int` | `SEARCH_SELECTION` | `16384`
  `public static final int` | `SEARCH_TEXT` | `6291462`
  `public static final int` | `SEARCH_TOOLTIP` | `1024`
  `public static final int` | `SEARCH_TRUE_CAPTION` | `4`
  `public static final int` | `SEARCH_TRUE_INPUT` | `2`
  `public static final int` | `SEARCH_TRUE_NAME` | `1`
  `public static final int` | `SEARCH_TRUE_TEXT` | `6`

- ur_rna.GUITester.ScriptParser.GuiTestScriptParserConstants
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `ANCESTOR` | `68`
  `public static final int` | `ANDASSIGN` | `77`
  `public static final int` | `ARROW` | `41`
  `public static final int` | `ASSIGN` | `42`
  `public static final int` | `ASSIGN_REF` | `43`
  `public static final int` | `BIT_AND` | `63`
  `public static final int` | `BIT_NOT` | `47`
  `public static final int` | `BIT_OR` | `64`
  `public static final int` | `CHILD` | `69`
  `public static final int` | `COLON` | `49`
  `public static final int` | `COMMA` | `39`
  `public static final int` | `DECIMAL_LITERAL` | `11`
  `public static final int` | `DECR` | `57`
  `public static final int` | `DEFAULT` | `0`
  `public static final int` | `DESCENDANT` | `72`
  `public static final int` | `DIGIT` | `13`
  `public static final int` | `DIRECTIVE_PREFIX` | `26`
  `public static final int` | `DOT` | `40`
  `public static final int` | `EOF` | `0`
  `public static final int` | `EQ` | `50`
  `public static final int` | `ESC_CHAR` | `21`
  `public static final int` | `ESCAPED_CHAR` | `23`
  `public static final int` | `EXPONENT` | `18`
  `public static final int` | `FALSE` | `8`
  `public static final int` | `FLOAT_LITERAL` | `17`
  `public static final int` | `FLOAT_SUFFIX` | `19`
  `public static final int` | `GE` | `52`
  `public static final int` | `GT` | `44`
  `public static final int` | `HEX_CHAR` | `24`
  `public static final int` | `HEX_DIGIT` | `14`
  `public static final int` | `HEX_LITERAL` | `12`
  `public static final int` | `HOOK` | `48`
  `public static final int` | `IDENTIFIER` | `28`
  `public static final int` | `INCR` | `56`
  `public static final int` | `INT_SUFFIX` | `16`
  `public static final int` | `INTEGER_LITERAL` | `10`
  `public static final int` | `LBRACE` | `34`
  `public static final int` | `LBRACKET` | `36`
  `public static final int` | `LE` | `51`
  `public static final int` | `LETTER` | `31`
  `public static final int` | `LPAREN` | `32`
  `public static final int` | `LSHIFTASSIGN` | `81`
  `public static final int` | `LT` | `45`
  `public static final int` | `METHOD_PREFIX` | `27`
  `public static final int` | `MINUS` | `59`
  `public static final int` | `MINUSASSIGN` | `74`
  `public static final int` | `MOD` | `66`
  `public static final int` | `MULTI_LINE_COMMENT` | `6`
  `public static final int` | `NE` | `53`
  `public static final int` | `NEWLINE` | `3`
  `public static final int` | `NOT` | `46`
  `public static final int` | `NULL` | `9`
  `public static final int` | `OCTAL_LITERAL` | `15`
  `public static final int` | `ORASSIGN` | `78`
  `public static final int` | `PARENT` | `67`
  `public static final int` | `PLUS` | `58`
  `public static final int` | `PLUSASSIGN` | `73`
  `public static final int` | `POW` | `60`
  `public static final int` | `RBRACE` | `35`
  `public static final int` | `RBRACKET` | `37`
  `public static final int` | `REL_LABEL` | `71`
  `public static final int` | `REMASSIGN` | `80`
  `public static final int` | `RPAREN` | `33`
  `public static final int` | `RSIGNEDSHIFTASSIGN` | `82`
  `public static final int` | `RUNSIGNEDSHIFTASSIGN` | `83`
  `public static final int` | `SC_AND` | `55`
  `public static final int` | `SC_OR` | `54`
  `public static final int` | `SEMICOLON` | `38`
  `public static final int` | `SIBLING` | `70`
  `public static final int` | `SINGLE_LINE_COMMENT` | `5`
  `public static final int` | `SLASH` | `62`
  `public static final int` | `SLASHASSIGN` | `76`
  `public static final int` | `STAR` | `61`
  `public static final int` | `STARASSIGN` | `75`
  `public static final int` | `STRING_CHAR` | `22`
  `public static final int` | `STRING_LITERAL` | `20`
  `public static final int` | `TRUE` | `7`
  `public static final int` | `UNICODE_CHAR` | `25`
  `public static final int` | `WORD_CHAR` | `30`
  `public static final int` | `WORD_START_CHAR` | `29`
  `public static final int` | `XOR` | `65`
  `public static final int` | `XORASSIGN` | `79`

- ur_rna.GUITester.ScriptParser.GuiTestScriptParserTreeConstants
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `JJTACTION` | `3`
  `public static final int` | `JJTASSIGNMENT` | `2`
  `public static final int` | `JJTGUIREFERENCE` | `4`
  `public static final int` | `JJTGUISEARCHCRITERIA` | `5`
  `public static final int` | `JJTLITERAL` | `7`
  `public static final int` | `JJTNAMEDARGUMENT` | `8`
  `public static final int` | `JJTROOT` | `0`
  `public static final int` | `JJTVARREF` | `6`
  `public static final int` | `JJTVOID` | `1`

- ur_rna.GUITester.ScriptParser.JavaCharStream
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final boolean` | `staticFlag` | `false`

- ur_rna.GUITester.ScriptParser.ParseException
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `1L`

- ur_rna.GUITester.ScriptParser.ParseFormatException
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `1L`

- ur_rna.GUITester.ScriptParser.ScriptNodePropConstants
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `LHS` | `2`
  `public static final int` | `OPERATION` | `0`
  `public static final int` | `PRIMITIVE` | `3`
  `public static final int` | `RHS` | `1`

- ur_rna.GUITester.ScriptParser.Token
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `1L`

- ur_rna.GUITester.ScriptParser.TokenMgrError
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `static final int` | `INVALID_LEXICAL_STATE` | `2`
  `static final int` | `LEXICAL_ERROR` | `0`
  `static final int` | `LOOP_DETECTED` | `3`
  `private static final long` | `serialVersionUID` | `1L`
  `static final int` | `STATIC_LEXER_ERROR` | `1`

## ur_rna.RNAstructure.*

- ur_rna.RNAstructure.Nucleobase
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `A` | `1`
  `public static final int` | `Break` | `5`
  `public static final int` | `C` | `2`
  `public static final int` | `G` | `3`
  `public static final int` | `T` | `4`
  `public static final int` | `Unknown` | `0`

- ur_rna.RNAstructure.RnaBackendException
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `1L`

- ur_rna.RNAstructure.RNAstructureVersion
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final java.lang.String` | `RELEASE_DATE` | `"February 12, 2018"`
  `public static final java.lang.String` | `VERSION` | `"6.0.1"`

## ur_rna.RNAstructureUI.*

- ur_rna.RNAstructureUI.AppMainFrame
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `EditMenuSection` | `-80`
  `public static final int` | `FileMenuSection` | `-100`
  `public static final int` | `HelpMenuSection` | `1000`
  `public static final int` | `NucleicAcidMenuSection` | `-40`
  `public static final int` | `PredictMenuSection` | `-60`
  `private static final long` | `serialVersionUID` | `20160128L`

- ur_rna.RNAstructureUI.RNAstructure
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final java.lang.String` | `RELEASE_DATE` | `"February 12, 2018"`
  `public static final java.lang.String` | `REQUIRED_DLL_VERSION` | `"6.0.1"`
  `private static final long` | `serialVersionUID` | `20120802L`
  `public static final java.lang.String` | `VERSION` | `"6.0.1"`

- ur_rna.RNAstructureUI.drawing.dialogs.ImageDialog
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `protected final int` | `preferredDialogWidth` | `450`
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.drawing.dialogs.ImageDialog.PrintMenu
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.drawing.dialogs.ur_rna.RNAstructureUI.drawing.dialogs.ImageDialog.ZoomDialog
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.drawing.dialogs.PlotDialog
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.drawing.dialogs.StructureDialog
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.drawing.menus.AnnotationMenu
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.drawing.menus.DotsMenu
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120615L`

- ur_rna.RNAstructureUI.drawing.menus.ur_rna.RNAstructureUI.drawing.menus.DotsMenu.ColorDialog
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.drawing.menus.ur_rna.RNAstructureUI.drawing.menus.DotsMenu.RangeDialog
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.drawing.menus.PlotMenu
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120615L`

- ur_rna.RNAstructureUI.drawing.menus.StructureMenu
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.drawing.menus.ur_rna.RNAstructureUI.drawing.menus.StructureMenu.ChooseStructureDialog
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.drawing.runners.PlotRunner
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.drawing.runners.StructureRunner
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.menus.ConstraintsMenu
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.menus.ConstraintsMenu.NucOrHelixDialog
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.menus.FileMenu
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `DrawSection` | `-80`
  `public static final int` | `RefoldSection` | `-60`
  `public static final int` | `SequenceSection` | `-100`
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.menus.HelpMenu
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final java.lang.String` | `HELP_URL` | `"http://rna.urmc.rochester.edu/GUI/html/Contents.html"`
  `private static final java.lang.String` | `LOCAL_HELP_PAGE` | `"Contents.html"`
  `private static final long` | `serialVersionUID` | `20120802L`
  `private static final java.lang.String` | `WEB_URL` | `"http://rna.urmc.rochester.edu/"`

- ur_rna.RNAstructureUI.menus.MainMenu
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20160315L`

- ur_rna.RNAstructureUI.menus.MenuRolloverAdapter
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.menus.NucleicAcidMenu
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.menus.PredictMenu
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20160121L`

- ur_rna.RNAstructureUI.menus.RolloverListener
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20160316L`

- ur_rna.RNAstructureUI.ui.BorderBuilder
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.ui.BorderedButtonPanel
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.ui.Dialogs
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.ui.FieldPanel
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.ui.FieldPanel.FilePanel
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.ui.FileField
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.ui.HTMLCheckBox
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.ui.NumberField
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.ui.NumberField.DoubleField
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.ui.NumberField.FloatField
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.ui.NumberField.IntegerField
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.ui.RadioButtonPanel
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.ui.ScrollerPane
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `ALWAYS` | `1`
  `public static final int` | `NEVER` | `2`
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.ui.StandardFileChooser
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final java.lang.String` | `DEFAULT_CONTEXT` | `"(default)"`
  `public static final java.lang.String` | `PREFS` | `"recent-file-locations"`

- ur_rna.RNAstructureUI.ui.ValueSelectionDialog
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.utilities.BackgroundWorker
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `DEFAULT_UPDATE_INTERVAL` | `250`

- ur_rna.RNAstructureUI.utilities.ImageGrabber
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.utilities.UserOptions
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final java.lang.String` | `DRAW_ALWAYS` | `"Y"`
  `public static final java.lang.String` | `DRAW_NEVER` | `"N"`
  `public static final java.lang.String` | `DRAW_PROMPT` | `"P"`

- ur_rna.RNAstructureUI.windows.AccessFoldWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20160714L`

- ur_rna.RNAstructureUI.windows.ChildWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.DesignWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20160524L`

- ur_rna.RNAstructureUI.windows.DrawingWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.DuplexFoldWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20160714L`

- ur_rna.RNAstructureUI.windows.DynalignFoldWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.DynalignRefoldWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.Efn2Window
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.FoldDoubleWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.FoldSingleWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.FoldSuboptimalWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.InternalWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.MaxExpectWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.ModuleWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.MultilignWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.MultiWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `protected final int` | `columnWidth` | `350`
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.OligoScreenWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.OligoWalkWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.ur_rna.RNAstructureUI.windows.OligoWalkWindow.BarButton
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.OligoWalkWindow.OligoSelectionDialog
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.ur_rna.RNAstructureUI.windows.OligoWalkWindow.OligoWalkResultsMenu
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.OligoWalkWindow.SpinnerPanel
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.OligoWalkWindow.StringComboBox
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.PartitionDoubleWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.PartitionSingleWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.PredictBimolStructureWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20160122L`
  `private final java.lang.String` | `settingsNodeName` | `"PredictBimol"`

- ur_rna.RNAstructureUI.windows.PredictMultiStructureWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20160122L`
  `private final java.lang.String` | `settingsNodeName` | `"PredictMulti"`

- ur_rna.RNAstructureUI.windows.PredictSingleStructureWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20160122L`
  `private final java.lang.String` | `settingsNodeName` | `"PredictSingle"`

- ur_rna.RNAstructureUI.windows.PredictTwoStructureWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20160122L`
  `private final java.lang.String` | `settingsNodeName` | `"PredictDynalign"`

- ur_rna.RNAstructureUI.windows.PredictWindowBase
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final double` | `TEMP_37C` | `310.15`

- ur_rna.RNAstructureUI.windows.ProbKnotWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.PseudoknotWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.RefoldWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.SequenceDisplayWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final java.lang.String` | `allowedChars` | `" \r\n\t-ACGTUacgtuxXN"`
  `private static final java.lang.String` | `ignoreChars` | `" \r\n\t-"`
  `private static final long` | `serialVersionUID` | `20120802L`
  `private static final java.lang.String` | `standardBases` | `"ACGTU"`
  `private static final java.lang.String` | `unpairedBases` | `"acgtu"`
  `private static final java.lang.String` | `unspecifiedBases` | `"xXN"`

- ur_rna.RNAstructureUI.windows.ur_rna.RNAstructureUI.windows.SequenceDisplayWindow.EditMenu
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.ur_rna.RNAstructureUI.windows.SequenceDisplayWindow.SpeakMenu
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.StochasticWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.RNAstructureUI.windows.TurboFoldWindow
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

## ur_rna.StructureEditor.*

- ur_rna.StructureEditor.AppActions
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final java.lang.String` | `FEEDBACK_SECRET` | `"18qY19wP21fR21uCuL1v"`
  `private static final java.lang.String` | `FEEDBACK_URL` | `"http://rna2.urmc.rochester.edu/RNAstructureWeb/feedback.php"`
  `private static final java.lang.String` | `HELP_URL` | `"http://rna.urmc.rochester.edu/GUI/html/StructureEditor.html"`
  `private static final java.lang.String` | `LOCAL_HELP_PAGE` | `"StructureEditor.html"`
  `private static final java.lang.String` | `WEB_URL` | `"http://rna.urmc.rochester.edu/"`

- ur_rna.StructureEditor.MainFrame
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `EditMenuSection` | `-80`
  `public static final int` | `FileMenuSection` | `-100`
  `public static final int` | `FormatMenuSection` | `-20`
  `public static final int` | `HelpMenuSection` | `1000`
  `public static final int` | `SettingsMenuSection` | `900`
  `public static final int` | `ViewMenuSection` | `-40`
  `public static final int` | `WindowsMenuSection` | `910`

- ur_rna.StructureEditor.Program
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final java.lang.String` | `APPNAME` | `"RNAeditor"`
  `public static final java.lang.String` | `C_YEAR` | `"2016 - 2017"`
  `public static final java.lang.String` | `RESOURCES` | `"/ur_rna/StructureEditor/resources/"`
  `public static final java.lang.String` | `TITLE` | `"Structure Editor"`
  `public static final int` | `VERSION_MAJOR` | `1`
  `public static final int` | `VERSION_MINOR` | `0`

- ur_rna.StructureEditor.Settings
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final java.lang.String` | `nullValue` | `"{~NULL}"`

- ur_rna.StructureEditor.menus.FileMenu
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `BOTTOM_POS` | `10000`
  `public static final int` | `CLOSE_FILE_POS` | `-70`
  `public static final int` | `OPEN_FILE_POS` | `-100`
  `public static final int` | `SAVE_FILE_POS` | `-80`

- ur_rna.StructureEditor.menus.MainMenu
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20160315L`

- ur_rna.StructureEditor.models.IScreenObject
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `ZORDER_MAX` | `2147483647`
  `public static final int` | `ZORDER_MIN` | `-2147483648`

- ur_rna.StructureEditor.models.StrandList
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `static final int` | `NO_REINDEX` | `2147483647`

- ur_rna.StructureEditor.services.RnaDrawController
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final double` | `minBiasRange` | `2.0943951023931953`
  `private static final double` | `stickyRotationEpsilon` | `0.08726646259971647`

- ur_rna.StructureEditor.services.ur_rna.StructureEditor.services.RnaDrawController.MouseHandler
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `static final int` | `DRAGGING` | `2`
  `static final int` | `EDITING` | `3`
  `static final int` | `minDragDistSq` | `0`
  `static final int` | `SELECTING` | `1`

- ur_rna.StructureEditor.services.ur_rna.StructureEditor.services.RnaDrawController.ScreenNuc
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `final float` | `OUTLINE_WIDTH` | `0.5f`
  `public final int` | `selectionBorder` | `3`

- ur_rna.StructureEditor.services.SceneColorizer.ColorMode
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `Bond` | `8`
  `public static final int` | `Fill` | `1`
  `public static final int` | `None` | `0`
  `public static final int` | `Outline` | `4`
  `public static final int` | `Text` | `2`

- ur_rna.StructureEditor.services.UserPrefs
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final java.lang.String` | `DEFAULT_USER` | `"default"`

- ur_rna.StructureEditor.services.drawing.DrawHandle
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final float` | `SNAP_DISTANCE` | `6.0f`

- ur_rna.StructureEditor.services.drawing.export.PageSize
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final double` | `MM_PER_INCH` | `25.4`

- ur_rna.StructureEditor.services.drawing.export.SvgGraphicsExporter
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final java.lang.String` | `CHARSET_UTF8` | `"UTF-8"`
  `private static final java.lang.String` | `SVG_DOCTYPE_NAME` | `"svg"`
  `private static final java.lang.String` | `SVG_DOCTYPE_PUBLIC_ID` | `"-//W3C//DTD SVG 1.1//EN"`
  `private static final java.lang.String` | `SVG_DOCTYPE_SYSTEM_ID` | `"http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd"`
  `private static final java.lang.String` | `SVG_NAMESPACE_URI` | `"http://www.w3.org/2000/svg"`
  `private static final java.lang.String` | `XLINK_NAMESPACE` | `"xlink"`
  `private static final java.lang.String` | `XLINK_NAMESPACE_URI` | `"http://www.w3.org/1999/xlink"`

- ur_rna.StructureEditor.services.fileIO.ur_rna.StructureEditor.services.fileIO.DrawingFileIO.CTE
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final java.lang.String` | `BOND_COLOR` | `"BC"`
  `public static final java.lang.String` | `BOND_TYPE` | `"B"`
  `public static final java.lang.String` | `FILL_COLOR` | `"FC"`
  `public static final java.lang.String` | `FONT` | `"FS"`
  `public static final java.lang.String` | `LINE_COLOR` | `"LC"`
  `public static final int` | `PAD_COLOR` | `7`
  `public static final int` | `PAD_FONT` | `10`
  `public static final int` | `PAD_INDEX` | `4`
  `public static final int` | `PAD_LOC` | `6`
  `public static final int` | `PAD_SYMBOL` | `-4`
  `public static final int` | `PAD_TOTAL` | `5`
  `public static final java.lang.String` | `PROP_SEPARATOR` | `";!"`
  `public static final java.lang.String` | `TEXT_COLOR` | `"TC"`
  `public static final java.lang.String` | `X` | `"X"`
  `public static final java.lang.String` | `Y` | `"Y"`

- ur_rna.StructureEditor.services.fileIO.ur_rna.StructureEditor.services.fileIO.DrawingFileIO.NSD
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final java.lang.String` | `BOND_NUCS` | `"Pair"`
  `public static final java.lang.String` | `BOND_TYPE` | `"Type"`
  `public static final java.lang.String` | `BONDS` | `"Pairs"`
  `public static final java.lang.String` | `DRAW_FLIP` | `"Flip"`
  `public static final java.lang.String` | `DRAW_MODE` | `"Mode"`
  `public static final float` | `LOC_ZERO` | `0.0f`
  `public static final java.lang.String` | `NUC_ID` | `"ID"`
  `public static final java.lang.String` | `NUC_NUMBER` | `"HNum"`
  `public static final java.lang.String` | `NUC_SYMBOL` | `"Base"`
  `public static final java.lang.String` | `STRAND_NUCS` | `"Strand"`
  `public static final java.lang.String` | `STRANDS` | `"Strands"`
  `public static final java.lang.String` | `STYLE` | `"Style"`
  `public static final java.lang.String` | `STYLE_BOND` | `"Bond"`
  `public static final java.lang.String` | `STYLE_FILL` | `"Fill"`
  `public static final java.lang.String` | `STYLE_FONT` | `"Font"`
  `public static final java.lang.String` | `STYLE_LINE` | `"Line"`
  `public static final java.lang.String` | `STYLE_TEXT` | `"Color"`
  `public static final java.lang.String` | `STYLES` | `"Styles"`
  `public static final java.lang.String` | `TITLE` | `"Title"`
  `public static final int` | `UNSTYLED` | `-1`
  `public static final java.lang.String` | `VERSION` | `"Version"`
  `public static final java.lang.String` | `X` | `"X"`
  `public static final java.lang.String` | `Y` | `"Y"`

- ur_rna.StructureEditor.services.fileIO.ur_rna.StructureEditor.services.fileIO.DrawingFileIO.SimpleScanner
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final java.lang.String` | `END_TOKEN` | `"(?=\\s|$)"`

- ur_rna.StructureEditor.services.fileIO.RnaFileIO
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final java.lang.String` | `ALPHABET_RNA` | `"rna"`
  `public static final char` | `InterMolecularBreakChar` | `73`
  `public static final java.lang.String` | `InterMolecularBreakStr` | `"III"`
  `public static final int` | `MAX_SEQUENCE_LENGTH` | `10000`
  `public static final int` | `SEQUENCE_FMT_FASTA` | `2`
  `public static final int` | `SEQUENCE_FMT_SEQ` | `1`
  `public static final int` | `SEQUENCE_FMT_TEXT` | `0`

- ur_rna.StructureEditor.ui.DrawPanel
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private final int` | `MARGIN` | `5`
  `private static final int` | `ZOOM_MASK` | `128`

- ur_rna.StructureEditor.windows.DashboardFrame
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final java.lang.String` | `EXAMPLE_INDICATOR` | `"example://"`

- ur_rna.StructureEditor.windows.ur_rna.StructureEditor.windows.NewFileWindow.StructItem
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `BP` | `2`
  `public static final int` | `DOT` | `3`
  `public static final int` | `ERROR` | `0`
  `public static final int` | `HELIX` | `1`

## ur_rna.Utilities.*

- ur_rna.Utilities.CharConstants
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final char` | `ALERT` | `7`
  `public static final char` | `BACK_SLASH` | `92`
  `public static final char` | `BKSP` | `8`
  `public static final char` | `CR` | `13`
  `public static final java.lang.String` | `CRLF` | `"\r\n"`
  `public static final char` | `DBL_QUOT` | `39`
  `public static final char` | `DEL` | `127`
  `public static final char` | `ESC` | `27`
  `public static final char` | `FF` | `12`
  `public static final int` | `HEX_RADIX` | `16`
  `public static final char` | `LAST_ASCII` | `255`
  `public static final char` | `LF` | `10`
  `public static final char` | `NUL` | `0`
  `public static final char` | `SLASH` | `47`
  `public static final char` | `SNG_QUOT` | `34`
  `public static final char` | `SP` | `32`
  `public static final char` | `TAB` | `9`
  `public static final char` | `UPPER_ASCII` | `128`

- ur_rna.Utilities.CharType
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `ALL` | `-1`
  `public static final int` | `ALPHA` | `5120`
  `public static final int` | `ALPHA_NUM` | `7168`
  `public static final int` | `BACKSLASH` | `524288`
  `public static final int` | `COMMA` | `2097152`
  `public static final int` | `CONTROL` | `1`
  `public static final int` | `DECIMAL_NUMBER` | `3147776`
  `public static final int` | `DIGITS` | `2048`
  `public static final int` | `DOT` | `1048576`
  `public static final int` | `DOUBLE_QUOTES` | `131072`
  `public static final int` | `EXT_ASCII` | `536870912`
  `public static final int` | `LOWER_ALPHA` | `4096`
  `public static final int` | `MISC_SYMBOLS` | `134217728`
  `public static final int` | `NEWLINE` | `32`
  `public static final int` | `NON_PRINTABLE` | `49`
  `public static final int` | `NONE` | `0`
  `public static final int` | `PUNCTUATION` | `3145728`
  `public static final int` | `QUOTES` | `196608`
  `public static final int` | `SINGLE_QUOTE` | `65536`
  `public static final int` | `SLASH` | `262144`
  `public static final int` | `SPACE` | `256`
  `public static final int` | `SYMBOLS` | `268369920`
  `public static final int` | `TAB` | `16`
  `public static final int` | `UNDERSCORE` | `4194304`
  `public static final int` | `UPPER_ALPHA` | `1024`
  `public static final int` | `WHITESPACE` | `304`
  `public static final int` | `WORD_CHARS` | `4199424`

- ur_rna.Utilities.Constants
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `HEX_RADIX` | `16`
  `public static final int` | `OCTAL_RADIX` | `8`

- ur_rna.Utilities.ur_rna.Utilities.ConverterFilter.FilterIterator
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final int` | `AT_END` | `-1`
  `private static final int` | `AWAITING_CONSUMER` | `1`
  `private static final int` | `ITERATING` | `0`

- ur_rna.Utilities.DateHelper
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `EN_US` | `4`
  `public static final java.lang.String` | `EN_US_Format` | `"MM/dd/yyyy HH:mm:ss"`
  `public static final int` | `FileDate` | `2`
  `public static final java.lang.String` | `FileDateFormat` | `"yyyy-MM-dd"`
  `public static final int` | `FileDateTime` | `3`
  `public static final java.lang.String` | `FileDateTimeFormat` | `"yyyy-MM-dd.HHmmss"`
  `public static final int` | `ISO8601` | `1`
  `public static final java.lang.String` | `ISO8601Format` | `"yyyy-MM-dd\'T\'HH:mm:ss"`

- ur_rna.Utilities.ur_rna.Utilities.ExtendedBufferedReader
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `CR` | `10`
  `private static final int` | `defaultGuessLineLength` | `256`
  `public static final int` | `EOF` | `-1`
  `public static final int` | `LF` | `13`
  `public static final int` | `UNKNOWN` | `-2`

- ur_rna.Utilities.ExtensibleException
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `1L`

- ur_rna.Utilities.ur_rna.Utilities.Filter.FilterIterator
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final int` | `AT_END` | `-1`
  `private static final int` | `AWAITING_CONSUMER` | `1`
  `private static final int` | `ITERATING` | `0`

- ur_rna.Utilities.FormatterException
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `1L`

- ur_rna.Utilities.JniLoader.NativeLibLoadError
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `1L`

- ur_rna.Utilities.KeyAlreadyExistsException
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `1L`

- ur_rna.Utilities.OSInfo
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20120802L`

- ur_rna.Utilities.ResourceLoader
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `protected static final char` | `pathSep` | `47`

- ur_rna.Utilities.SimpleDataSerializer
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final java.lang.String` | `END_TOKEN` | `"(?=\\s|[:{}()\\[\\]\"]|$)"`
  `private static final int` | `STRING_ESCAPE_OPTIONS` | `655360`

- ur_rna.Utilities.StringBuilderEx
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `static final long` | `serialVersionUID` | `42L`

- ur_rna.Utilities.Strings
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `DefaultBufferSize` | `4096`

- ur_rna.Utilities.SyntaxErrorException
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `1L`

- ur_rna.Utilities.geom.Ellipses
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final double` | `toScreenDegrees` | `-57.29577951308232`

- ur_rna.Utilities.geom.Matrix3D
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final double` | `EPSILON` | `1.110223024E-16`
  `static final long` | `serialVersionUID` | `20160913L`

- ur_rna.Utilities.geom.Vec2D
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final double` | `toStringRoundFactor` | `1.0E7`
  `public static final double` | `TwoPI` | `6.283185307179586`

- ur_rna.Utilities.swing.FileDialog
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final java.lang.String` | `DEFAULT_CONTEXT` | `"(default)"`
  `public static final java.lang.String` | `PREFS` | `"recent-file-locations"`

- ur_rna.Utilities.swing.FontUtil
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final java.lang.String` | `FONT_TEST_STRING` | `"The quick brown fox jumps over the lazy dog"`

- ur_rna.Utilities.swing.FormValidationException
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final long` | `serialVersionUID` | `20170810L`

- ur_rna.Utilities.swing.IMergeItem
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final int` | `MergePosDefault` | `0`
  `public static final int` | `MergePosInitial` | `-2147483647`
  `public static final int` | `MergePosInvalid` | `-2147483647`
  `public static final int` | `MergePosMax` | `2147483647`
  `public static final int` | `MergePosMin` | `-2147483632`

- ur_rna.Utilities.swing.UiAction
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `public static final java.lang.String` | `TEXT_KEY` | `"HandlerTextKey"`

- ur_rna.Utilities.swing.WaitDialog
  Modifier and Type | Constant Field | Value
  --- | --- | ---
  `private static final java.lang.String` | `DEFAULT_MESSAGE` | `"Operation in progress. Please wait..."`
  `private static final java.lang.String` | `DEFAULT_TITLE` | `"Please wait..."`