JavaScript is disabled on your browser.
Skip navigation links
Overview
Package
Class
Tree
Index
Help
Prev
Next
Frames
No Frames
All Classes
Hierarchy For All Packages
Package Hierarchies:
ur_rna.GUITester
,
ur_rna.GUITester.GuiTools
,
ur_rna.GUITester.GuiTools.Matchers
,
ur_rna.GUITester.ScriptParser
,
ur_rna.RNAstructureUI
,
ur_rna.RNAstructureUI.drawing.dialogs
,
ur_rna.RNAstructureUI.drawing.menus
,
ur_rna.RNAstructureUI.drawing.proxy
,
ur_rna.RNAstructureUI.drawing.runners
,
ur_rna.RNAstructureUI.menus
,
ur_rna.RNAstructureUI.utilities
,
ur_rna.RNAstructureUI.windows
,
ur_rna.Utilities
,
ur_rna.Utilities.annotation
Class Hierarchy
java.lang.Object
java.util.AbstractCollection<E> (implements java.util.Collection<E>)
java.util.AbstractList<E> (implements java.util.List<E>)
java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
ur_rna.RNAstructureUI.menus.
MenuList
(implements ur_rna.Utilities.swing.IMenuItem)
ur_rna.Utilities.
SimpleDataSerializer.SSONList
java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
java.util.HashMap<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
ur_rna.RNAstructureUI.utilities.
CalcParams
java.util.LinkedHashMap<K,V> (implements java.util.Map<K,V>)
ur_rna.Utilities.
SimpleDataSerializer.SSONMap
ur_rna.Utilities.
ActionHandlers
ur_rna.Utilities.
AppInfo
ur_rna.Utilities.
AppLog
ur_rna.RNAstructureUI.utilities.
BackgroundWorker.ErrorInfo
abbot.finder.BasicFinder (implements abbot.finder.ComponentFinder)
ur_rna.GUITester.GuiTools.
GuiFinder
ur_rna.Utilities.
CharConstants
ur_rna.Utilities.
CharType
ur_rna.RNAstructureUI.windows.
ChildWindow.CommandInfo
ur_rna.Utilities.
ClassLoaderInfo
ur_rna.Utilities.
Colors
ur_rna.Utilities.
CommandLineParser
ur_rna.Utilities.
CommandLineParser.Argument
ur_rna.Utilities.
CommandLineParser.FlagArg
ur_rna.Utilities.
CommandLineParser.UnnamedArg
ur_rna.Utilities.
CommandLineParser.FlagDef
ur_rna.Utilities.
CommandLineParser.ParseResults
ur_rna.Utilities.
CommandLineSplitter
java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
java.awt.Container
javax.swing.JComponent (implements java.io.Serializable)
javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
javax.swing.JButton (implements javax.accessibility.Accessible)
ur_rna.RNAstructureUI.windows.
OligoWalkWindow.BarButton
javax.swing.JMenuItem (implements javax.accessibility.Accessible, javax.swing.MenuElement)
javax.swing.JMenu (implements javax.accessibility.Accessible, javax.swing.MenuElement)
ur_rna.Utilities.swing.MergeMenu (implements ur_rna.Utilities.swing.IMenuItem, ur_rna.Utilities.swing.IMergeItem)
ur_rna.RNAstructureUI.menus.
MainMenu
(implements java.awt.event.ActionListener)
ur_rna.RNAstructureUI.drawing.menus.
AnnotationMenu
ur_rna.RNAstructureUI.menus.
ConstraintsMenu
ur_rna.RNAstructureUI.drawing.menus.
DotsMenu
ur_rna.RNAstructureUI.menus.
FileMenu
ur_rna.RNAstructureUI.menus.
HelpMenu
ur_rna.RNAstructureUI.drawing.dialogs.
ImageDialog.PrintMenu
ur_rna.RNAstructureUI.menus.
NucleicAcidMenu
ur_rna.RNAstructureUI.windows.
OligoWalkWindow.OligoWalkResultsMenu
ur_rna.RNAstructureUI.drawing.menus.
PlotMenu
ur_rna.RNAstructureUI.menus.
PredictMenu
ur_rna.RNAstructureUI.windows.
SequenceDisplayWindow.EditMenu
ur_rna.RNAstructureUI.windows.
SequenceDisplayWindow.SpeakMenu
ur_rna.RNAstructureUI.drawing.menus.
StructureMenu
javax.swing.JComboBox<E> (implements javax.accessibility.Accessible, java.awt.event.ActionListener, java.awt.ItemSelectable, javax.swing.event.ListDataListener)
ur_rna.RNAstructureUI.windows.
OligoWalkWindow.StringComboBox
javax.swing.JInternalFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
ur_rna.RNAstructureUI.windows.
AboutWindow
(implements java.awt.event.ActionListener)
ur_rna.RNAstructureUI.windows.
ChildWindow
(implements java.awt.event.FocusListener)
ur_rna.RNAstructureUI.drawing.dialogs.
ImageDialog
(implements java.awt.print.Printable)
ur_rna.RNAstructureUI.drawing.dialogs.
PlotDialog
ur_rna.RNAstructureUI.drawing.dialogs.
StructureDialog
ur_rna.RNAstructureUI.windows.
InternalWindow
(implements java.awt.event.ActionListener)
ur_rna.RNAstructureUI.windows.
DrawingWindow
ur_rna.RNAstructureUI.windows.
ModuleWindow
ur_rna.RNAstructureUI.windows.
AccessFoldWindow
ur_rna.RNAstructureUI.windows.
DesignWindow
ur_rna.RNAstructureUI.windows.
DuplexFoldWindow
ur_rna.RNAstructureUI.windows.
DynalignFoldWindow
ur_rna.RNAstructureUI.windows.
DynalignRefoldWindow
ur_rna.RNAstructureUI.windows.
Efn2Window
ur_rna.RNAstructureUI.windows.
FoldDoubleWindow
ur_rna.RNAstructureUI.windows.
FoldSingleWindow
ur_rna.RNAstructureUI.windows.
FoldSuboptimalWindow
ur_rna.RNAstructureUI.windows.
MaxExpectWindow
ur_rna.RNAstructureUI.windows.
MultiWindow
ur_rna.RNAstructureUI.windows.
MultilignWindow
ur_rna.RNAstructureUI.windows.
TurboFoldWindow
ur_rna.RNAstructureUI.windows.
OligoScreenWindow
ur_rna.RNAstructureUI.windows.
OligoWalkWindow
ur_rna.RNAstructureUI.windows.
PartitionDoubleWindow
ur_rna.RNAstructureUI.windows.
PartitionSingleWindow
ur_rna.RNAstructureUI.windows.
ProbKnotWindow
ur_rna.RNAstructureUI.windows.
PseudoknotWindow
ur_rna.RNAstructureUI.windows.
RefoldWindow
ur_rna.RNAstructureUI.windows.
StochasticWindow
ur_rna.RNAstructureUI.windows.
PredictionResultsWindow
ur_rna.RNAstructureUI.windows.
PredictWindowBase
ur_rna.RNAstructureUI.windows.
PredictBimolStructureWindow
ur_rna.RNAstructureUI.windows.
PredictMultiStructureWindow
ur_rna.RNAstructureUI.windows.
PredictSingleStructureWindow
ur_rna.RNAstructureUI.windows.
PredictTwoStructureWindow
ur_rna.RNAstructureUI.windows.
SequenceDisplayWindow
javax.swing.JPanel (implements javax.accessibility.Accessible)
ur_rna.RNAstructureUI.windows.
OligoWalkWindow.SpinnerPanel
java.awt.Window (implements javax.accessibility.Accessible)
java.awt.Dialog
javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
ur_rna.RNAstructureUI.ui.ValueSelectionDialog
ur_rna.RNAstructureUI.menus.
ConstraintsMenu.NucOrHelixDialog
ur_rna.RNAstructureUI.drawing.menus.
DotsMenu.ColorDialog
ur_rna.RNAstructureUI.drawing.menus.
DotsMenu.RangeDialog
ur_rna.RNAstructureUI.drawing.dialogs.
ImageDialog.ZoomDialog
ur_rna.RNAstructureUI.windows.
OligoWalkWindow.OligoSelectionDialog
ur_rna.RNAstructureUI.drawing.menus.
StructureMenu.ChooseStructureDialog
java.awt.Frame (implements java.awt.MenuContainer)
javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
ur_rna.RNAstructureUI.
AppMainFrame
ur_rna.GUITester.GuiTools.Matchers.
ComposableBase
(implements ur_rna.GUITester.GuiTools.Matchers.
ComposableMatcher
)
ur_rna.GUITester.GuiTools.Matchers.
ClassMatcher
ur_rna.GUITester.GuiTools.Matchers.
ClassMatcher.MultiClassMatcher
ur_rna.GUITester.GuiTools.Matchers.
ClassMatcher.SingleClassMatcher
ur_rna.GUITester.GuiTools.Matchers.
ComposableBase.BinaryMatcher
ur_rna.GUITester.GuiTools.Matchers.
ComposableBase.BinaryMatcher.And
ur_rna.GUITester.GuiTools.Matchers.
ComposableBase.BinaryMatcher.Or
ur_rna.GUITester.GuiTools.Matchers.
ComposableBase.BinaryMatcher.Xor
ur_rna.GUITester.GuiTools.Matchers.
ComposableBase.Identity
ur_rna.GUITester.GuiTools.Matchers.
ComposableBase.Inverse
ur_rna.GUITester.GuiTools.Matchers.
DescriptionMatcher
ur_rna.GUITester.GuiTools.Matchers.
VisibilityMatcher
ur_rna.Utilities.
ConsoleTools
ur_rna.Utilities.
Constants
ur_rna.Utilities.
Convert
ur_rna.Utilities.
ConverterFilter
<T,C>
ur_rna.Utilities.
ConverterFilter.SimpleCast
ur_rna.Utilities.
ConverterFilter.FilterIterator
(implements java.util.Iterator<E>)
ur_rna.Utilities.
DateHelper
ur_rna.RNAstructureUI.drawing.proxy.
DotPlotBackend
ur_rna.RNAstructureUI.drawing.proxy.
DotPlotBackendProxyJNI
ur_rna.Utilities.
EventArgs
ur_rna.RNAstructureUI.utilities.
BackgroundWorker.StateChangeEventArgs
ur_rna.Utilities.
EventArgs.ActionEventArgs
ur_rna.Utilities.
EventArgs.BoolEventArgs
ur_rna.Utilities.
EventArgs.EventObjectArgs
ur_rna.Utilities.
EventArgs.InfoBagEventArgs
ur_rna.Utilities.
EventArgs.IntEventArgs
ur_rna.Utilities.
EventArgs.ObjEventArgs
<T>
ur_rna.Utilities.
EventArgs.StringEventArgs
java.util.EventObject (implements java.io.Serializable)
java.awt.AWTEvent
java.awt.event.ActionEvent
ur_rna.RNAstructureUI.utilities.
FileSelectedEvent
ur_rna.Utilities.
EventSource
<TSubscriber>
ur_rna.Utilities.
EventSource.NoArg
ur_rna.Utilities.
EventSource.OneArg
<TArg>
ur_rna.Utilities.
EventSource.TwoArgs
<TArg1,TArg2>
ur_rna.Utilities.
EventSource.Manager
ur_rna.Utilities.
EventSource.Manager.Subscriber
ur_rna.Utilities.
ExceptionHelper
ur_rna.RNAstructureUI.utilities.
FileFilters
ur_rna.Utilities.
Filter
<T>
ur_rna.Utilities.
Filter.FilterIterator
(implements java.util.Iterator<E>)
ur_rna.GUITester.GuiTools.
GuiAppManager
ur_rna.GUITester.GuiTools.
GuiItemRef
ur_rna.GUITester.GuiTools.
GuiItemRef.ComponentMatcher
(implements abbot.finder.Matcher)
ur_rna.GUITester.ScriptParser.
GuiTestScriptParser
(implements ur_rna.GUITester.ScriptParser.
GuiTestScriptParserConstants
, ur_rna.GUITester.ScriptParser.
GuiTestScriptParserTreeConstants
)
ur_rna.GUITester.ScriptParser.
GuiTestScriptParser.JJCalls
ur_rna.GUITester.ScriptParser.
GuiTestScriptParserTokenManager
(implements ur_rna.GUITester.ScriptParser.
GuiTestScriptParserConstants
)
ur_rna.RNAstructureUI.utilities.
ImageGrabber
(implements java.io.Serializable)
ur_rna.RNAstructureUI.windows.
InternalWindow.CommandInfo
ur_rna.GUITester.ScriptParser.
JavaCharStream
ur_rna.GUITester.ScriptParser.
JJTGuiTestScriptParserState
ur_rna.Utilities.
JniLoader
ur_rna.Utilities.
MathUtil
ur_rna.RNAstructureUI.menus.
MenuRolloverAdapter
(implements java.awt.event.MouseListener, java.io.Serializable)
ur_rna.RNAstructureUI.utilities.
MRUFileStorage
ur_rna.Utilities.
NamedArg
ur_rna.Utilities.
ObjTools
ur_rna.Utilities.
ObjTools.RefBool
ur_rna.Utilities.
ObjTools.RefInt
ur_rna.Utilities.
ObjTools.RefStr
ur_rna.Utilities.
OSInfo
(implements java.io.Serializable)
java.io.OutputStream (implements java.io.Closeable, java.io.Flushable)
java.io.ByteArrayOutputStream
ur_rna.Utilities.
NullPrintStream.NullByteArrayOutputStream
ur_rna.Utilities.
ConsoleTools.FixedStream
java.io.FilterOutputStream
java.io.PrintStream (implements java.lang.Appendable, java.io.Closeable)
ur_rna.Utilities.
NullPrintStream
ur_rna.Utilities.
Pair
<K,V> (implements java.util.Map.Entry<K,V>)
ur_rna.Utilities.
PathTools
ur_rna.Utilities.
PathTools.FileName
ur_rna.RNAstructureUI.windows.
PredictionResultsWindow.PlotResult
ur_rna.RNAstructureUI.windows.
PredictMultiStructureWindow.SequenceItem
ur_rna.RNAstructureUI.windows.
PredictWindowBase.FieldInfo
ur_rna.RNAstructureUI.windows.
PredictWindowBase.FileFieldInfo
ur_rna.RNAstructureUI.windows.
PredictWindowBase.PredictTaskBase
(implements ur_rna.RNAstructureUI.windows.
PredictWindowBase.BackgroundTask
)
ur_rna.RNAstructureUI.windows.
PredictBimolStructureWindow.PredictTask
ur_rna.RNAstructureUI.windows.
PredictMultiStructureWindow.PredictTask
ur_rna.RNAstructureUI.windows.
PredictSingleStructureWindow.PredictSingleStructureTask
ur_rna.RNAstructureUI.windows.
PredictTwoStructureWindow.PredictTask
java.io.Reader (implements java.io.Closeable, java.lang.Readable)
java.io.BufferedReader
ur_rna.Utilities.
ExtendedBufferedReader
ur_rna.RNAstructureUI.utilities.
RequestFocusListener
(implements javax.swing.event.AncestorListener)
ur_rna.Utilities.
ResourceLoader
ur_rna.RNAstructureUI.utilities.
Resources
ur_rna.RNAstructureUI.
RNAstructure
(implements java.io.Serializable)
ur_rna.RNAstructureUI.
RNAstructureBackendCalculator
ur_rna.RNAstructureUI.
RNAstructureBackendCalculatorProxyJNI
abbot.tester.Robot (implements abbot.tester.AWTConstants)
ur_rna.GUITester.GuiTools.
GuiRobot
ur_rna.RNAstructureUI.menus.
RolloverListener
(implements java.awt.event.MouseListener, java.io.Serializable)
ur_rna.RNAstructureUI.utilities.
RunFunc
(implements java.lang.Runnable)
ur_rna.RNAstructureUI.drawing.runners.
RunnerTemplate
ur_rna.RNAstructureUI.drawing.runners.
PlotRunner
(implements java.io.Serializable)
ur_rna.RNAstructureUI.drawing.runners.
StructureRunner
(implements java.io.Serializable)
ur_rna.Utilities.
RunOnce
(implements ur_rna.Utilities.
RunnableOnce
)
ur_rna.GUITester.
RuntimeTools
ur_rna.GUITester.GuiTools.
ScreenCapture
ur_rna.GUITester.
Script
ur_rna.GUITester.
ScriptActions
ur_rna.GUITester.ScriptParser.
ScriptNode.DumpState
ur_rna.GUITester.
ScriptRunner
(implements java.lang.Runnable)
ur_rna.GUITester.
ScriptRuntime
ur_rna.RNAstructureUI.windows.
SequenceDisplayWindow.SoundPlayer
ur_rna.Utilities.
SimpleDataSerializer
ur_rna.Utilities.
SimpleDataSerializer.OutputFormatSettings
(implements java.lang.Cloneable)
ur_rna.Utilities.
SimpleDataSerializer.ParseContext
ur_rna.Utilities.
SimpleDataSerializer.Token
ur_rna.GUITester.ScriptParser.
SimpleNode
(implements ur_rna.GUITester.ScriptParser.
Node
)
ur_rna.GUITester.ScriptParser.
ScriptNode
(implements ur_rna.GUITester.ScriptParser.
ScriptNodePropConstants
)
ur_rna.GUITester.ScriptParser.
ASTAction
ur_rna.GUITester.ScriptParser.
ASTAssignment
ur_rna.GUITester.ScriptParser.
ASTGuiReference
ur_rna.GUITester.ScriptParser.
ASTGuiSearchCriteria
ur_rna.GUITester.ScriptParser.
ASTLiteral
ur_rna.GUITester.ScriptParser.
ASTNamedArgument
ur_rna.GUITester.ScriptParser.
ASTRoot
ur_rna.GUITester.ScriptParser.
ASTVarRef
ur_rna.GUITester.
Startup
ur_rna.GUITester.
Startup.AppOptions
ur_rna.Utilities.
StopWatch
ur_rna.Utilities.
StringBuilderEx
(implements java.lang.Appendable, java.lang.CharSequence, java.io.Serializable)
ur_rna.Utilities.
Strings
ur_rna.RNAstructureUI.drawing.proxy.
StructureBackend
ur_rna.RNAstructureUI.drawing.proxy.
StructureBackendProxyJNI
ur_rna.GUITester.GuiTools.Matchers.
SwingClassMatchers
javax.swing.SwingWorker<T,V> (implements java.util.concurrent.RunnableFuture<V>)
ur_rna.RNAstructureUI.utilities.
BackgroundWorker
(implements java.beans.PropertyChangeListener)
java.lang.Throwable (implements java.io.Serializable)
java.lang.Error
ur_rna.GUITester.ScriptParser.
GuiTestScriptParser.LookaheadSuccess
ur_rna.GUITester.ScriptParser.
TokenMgrError
java.lang.Exception
ur_rna.Utilities.
ExtensibleException
ur_rna.GUITester.GuiTools.
GuiItemNotFoundException
ur_rna.GUITester.
ScriptRuntimeException
ur_rna.GUITester.
RuntimeTools.ActionException
ur_rna.GUITester.
RuntimeTools.ActionArgumentException
ur_rna.GUITester.
RuntimeTools.UnsupportedActionException
ur_rna.Utilities.
FormatterException
ur_rna.Utilities.
JniLoader.NativeLibLoadError
ur_rna.GUITester.ScriptParser.
ParseException
ur_rna.GUITester.ScriptParser.
ParseFormatException
java.lang.RuntimeException
ur_rna.Utilities.
KeyAlreadyExistsException
ur_rna.Utilities.
SyntaxErrorException
ur_rna.GUITester.ScriptParser.
Token
(implements java.io.Serializable)
ur_rna.Utilities.
TreeNode
<T>
ur_rna.Utilities.
Tuple
ur_rna.Utilities.
Tuple.Pair
<T1,T2> (implements java.lang.Cloneable)
ur_rna.Utilities.
Tuple.Quad
<T1,T2,T3,T4>
ur_rna.Utilities.
Tuple.Singlet
<T1>
ur_rna.Utilities.
Tuple.Triplet
<T1,T2,T3> (implements java.lang.Cloneable)
ur_rna.RNAstructureUI.utilities.
UserOptions
ur_rna.Utilities.
Version
(implements java.lang.Comparable<T>)
Interface Hierarchy
ur_rna.Utilities.
ActionHandler
<T>
ur_rna.Utilities.
AppInfo.AppInfoProvider
ur_rna.Utilities.
Displayable
ur_rna.GUITester.ScriptParser.
GuiTestScriptParserConstants
ur_rna.GUITester.ScriptParser.
GuiTestScriptParserTreeConstants
ur_rna.Utilities.
Listener
<T>
abbot.finder.Matcher
ur_rna.GUITester.GuiTools.Matchers.
ComposableMatcher
ur_rna.GUITester.ScriptParser.
Node
java.lang.Runnable
ur_rna.RNAstructureUI.windows.
PredictWindowBase.BackgroundTask
ur_rna.Utilities.
RunnableOnce
ur_rna.GUITester.ScriptParser.
ScriptNodePropConstants
Annotation Type Hierarchy
ur_rna.Utilities.annotation.
ToFriendlyString
(implements java.lang.annotation.Annotation)
ur_rna.Utilities.annotation.
Nullable
(implements java.lang.annotation.Annotation)
ur_rna.Utilities.annotation.
NotNull
(implements java.lang.annotation.Annotation)
ur_rna.Utilities.annotation.
MagicConstant
(implements java.lang.annotation.Annotation)
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
ur_rna.RNAstructureUI.drawing.dialogs.
StructureDialog.DrawOptions
ur_rna.RNAstructureUI.utilities.
FileType
ur_rna.GUITester.
Startup.ScriptSource
ur_rna.GUITester.GuiTools.
GuiRobot.ModifierKey
ur_rna.GUITester.GuiTools.
GuiRelative
ur_rna.Utilities.
Verbosity
ur_rna.Utilities.
SimpleDataSerializer.TokenPattern
ur_rna.Utilities.
OSInfo.OSType
ur_rna.Utilities.
CommandLineParser.ParamAffinity
Skip navigation links
Overview
Package
Class
Tree
Index
Help
Prev
Next
Frames
No Frames
All Classes