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EnergyPlot is used to create a folding free energy plot generated after determining the structure of a strand or strands of nucleic acids.
USAGE: EnergyPlot <save file> <ps file> [options]
| <save file> |
The name of a binary folding save file containing free energy data from a previous folding calculation. These folding free energy save files usually end in ".sav". |
| <output file> |
The name of a file to which output will be written.
Depending on the options selected, this may be one of the following file types.
1) A Postscript image file.
2) An SVG image file.
3) A plain text file.
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| -h, -H, --help |
Display the usage details message. |
| --svg |
Specify that the output file should be an SVG image file, rather than a Postscript image file. |
| -t, -T, --text |
Write dot plot as a text file, rather than a Postscript image file. |
| -e, -E, --entries |
Specify the number of categories in the plot legend.
Default is 5 entries.
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| -max, -MAX, --maximum |
Specify the maximum value in the plot in kcal/mol.
Default is the largest valid value in the plot.
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| -min, -MIN, --minimum |
Specify the minimum value in the plot in kcal/mol.
Default is the smallest valid value in the plot.
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Reuter, J.S. and Mathews, D.H.
"RNAstructure: software for RNA secondary structure prediction and analysis."
BMC Bioinformatics, 11:129. (2010).
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Zuker, M.
"On finding all suboptimal foldings of an RNA molecule."
Science, 244:48-52. (1989).
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