ScriptNode _node
Token currentToken
int[][] expectedTokenSequences
java.lang.String[] tokenImage
int kind
int beginLine
int beginColumn
int endLine
int endColumn
java.lang.String image
Token next
Token specialToken
int errorCode
javax.swing.JToolBar bar
javax.swing.JLabel infoLabel
AppLog log
javax.swing.JDesktopPane desktop
java.lang.String error
java.lang.String file
javax.swing.JLabel label
javax.swing.JPanel legendGrid
javax.swing.JPanel mainPanel
double maxBoundX
double maxBoundY
java.awt.print.PrinterJob job
int preferredDialogWidth
double scale
DotPlotBackend backend
int strand
int plotLength
StructureBackend backend
java.lang.String[] data
boolean hasPairs
int number
java.lang.String[] regex
StructureDialog dialog
PlotDialog dialog
PlotDialog dialog
StructureDialog dialog
RNAstructureBackendCalculator backend
int str
javax.swing.JMenu drawOptionMenu
java.awt.event.MouseAdapter guiInfoListener
java.lang.String rollover
int specifiedPanelWidth
java.util.ArrayList<E> textFields
java.awt.event.ActionListener buttonListener
boolean isOutputFile
boolean isInputFile
java.lang.String filters
java.lang.String filters
java.lang.String command
java.awt.event.ActionListener onFileSelected
java.awt.event.ActionListener menuItemClicked
java.awt.event.ActionListener createExampleFilesClicked
java.io.File file
java.lang.Number initial
java.lang.Number maximum
java.lang.Number minimum
javax.swing.ButtonGroup group
java.util.ArrayList<E> group2
java.lang.String[] names
int defaultKeyStrokeModifier
boolean fileShouldExist
boolean isCurDirSet
java.lang.String context
boolean modifyDir
NumberField[] fields
javax.swing.JButton btnExtract
javax.swing.JPanel mainPanel
javax.swing.JButton btnClose
javax.swing.JLabel lblWebsite
javax.swing.JLabel lblHelp
javax.swing.JLabel lblLogo
NumberField.DoubleField maxdefect
NumberField.IntegerField maxdepth
NumberField.IntegerField maxmutate
NumberField.IntegerField maxleaf
NumberField.IntegerField maxredesign
ImageDialog dialog
boolean error
int strand
AppMainFrame mainFrame
javax.swing.JDesktopPane desktop
RNAstructureBackendCalculator backend
DynamicMenuBar menuBar
ModuleWindow self
java.awt.GridBagConstraints constraints
java.awt.GridBagLayout layout
boolean isRNA
java.awt.Component progressIndicator
java.lang.Thread mainCalcThread
javax.swing.JButton startButton
java.awt.event.ActionListener calcCancelListener
long calcCompleted
java.awt.event.ActionListener calcProgressListener
long lastUpdate
boolean calcCanceled
java.util.HashMap<K,V> enabledState
int columnWidth
java.util.ArrayList<E> imageDialogs
javax.swing.Box options
ScrollerPane scroll
boolean isInputWindow
javax.swing.JPanel panelInput
javax.swing.JPanel panelResults
javax.swing.JSpinner spinner
java.awt.Font defaultFont
javax.swing.JTextArea titleBox
javax.swing.JTextArea commentBox
javax.swing.JTextPane sequenceBox
javax.swing.text.StyledDocument sequenceDoc
boolean edited
boolean userAcceptedInvalidSequence
int speakPosition
javax.swing.JButton speakButton
boolean speakWhileTyping
boolean speakingFullSequence
javax.swing.Timer speakTimer
javax.swing.Timer styleTimer
javax.swing.text.Style defaultStyle
javax.swing.text.Style errorStyle
javax.swing.text.Style unpairedStyle
javax.swing.text.Style specialStyle
SequenceDisplayWindow.SoundPlayer _speakPlayer
java.util.HashMap<K,V> _speakStreams
SequenceDisplayWindow.SpeakMenu speakMenu
java.awt.CardLayout cards
javax.swing.JPanel specificPanel
java.lang.String updatedMessage
java.util.HashMap<K,V> data
java.util.Map<K,V> readOnlyData
java.lang.Object existingKey
java.lang.Object existingValue
java.lang.StringBuilder _sb
java.lang.String errorDescription
java.lang.String offendingText
java.lang.String location
SyntaxErrorException.getLocation()
.int lineOffset
int columnOffset