Welcome to the partition Web Server

The partition server takes a sequence file of nucleic acids, either DNA or RNA, and calculates its partition function. A wide variety of constraints can be applied, including, but not limited to, pairing restraints, modifications, and addition of SHAPE data. The output is the probability of base pairs in the secondary structure.

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If you need specific help using the partition server, please click here.

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RNAstructure tools have been updated to version which includes several improvements.
Please contact us with any questions or issues regarding this update.

Select Sequence Input:

Select Sequence File:

- OR -
Enter your sequence title and content below (replaces upload if present).
Please enter nucleotides only, no headers or comments in content.
Valid nucleotides are A, C, G, T, U, and X (unknown nucleotide). Lower case nucleotides are forced single stranded in calculation.

Sequence Title: Sequence: (Example sequence has been displayed.)

GGGGGCGUAG CUCAGAuGGU AGAGCGCUCG CUUgGCgUGU GAGAGGUACC GGGAUCGaUA CCCGGCGCCU CCACCA

Select Nucleic Acid Type:

DNA:
RNA:

Select partition Options:

Default Data If a default value is left blank, the value is treated as if it was not changed at all. Temperature (K):

Optional Data Select Folding Constraints File:

Specify the minimum and maximum probabilities to show on the dot plot.
If a specified probability is out of range, it is ignored. Minimum: Maximum:

Note that in order to use SHAPE intercept and/or SHAPE slope, a SHAPE constraints file must be specified. If a value is given for intercept or slope without an accompanying constraints file, the intercept or slope value is not used in calculation. Select SHAPE Constraints File: SHAPE Intercept: SHAPE Slope

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RNAstructure

Web Servers for RNA Secondary Structure Prediction

Welcome to the partition Web Server

Select Sequence Input:

Select Nucleic Acid Type:

Select partition Options:

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