RNAstructure oligoscreen Results
(Predict stability of hybridization and self-structure for a list of oligonucleotides.)

Sequence	DGbimolecular	DGunimolecular	DGduplex	DG2BPat5'	DG2BPat3'
AAACCATCCTGGAGGAGGTG	-18.0	-5.5	-39.0	1.8	4.3
GAAACCATCCTGGAGGAGGT	-16.4	-4.7	-39.3	3.8	5.0
AGAAACCATCCTGGAGGAGG	-13.4	-3.2	-39.2	4.5	5.9
CAGAAACCATCCTGGAGGAG	-12.3	-1.5	-38.5	4.2	4.5
CCAGAAACCATCCTGGAGGA	-12.3	-4.6	-39.2	5.9	5.2
CCCAGAAACCATCCTGGAGG	-11.1	-5.0	-40.6	6.6	5.9
GCCCAGAAACCATCCTGGAG	-13.0	-5.0	-40.7	6.7	4.5
GGCCCAGAAACCATCCTGGA	-13.0	-5.0	-41.4	6.7	5.2
TGGCCCAGAAACCATCCTGG	-13.0	-3.8	-41.1	4.9	5.9
TTGGCCCAGAAACCATCCTG	-13.0	-1.3	-38.7	2.5	4.2
ATTGGCCCAGAAACCATCCT	-8.0	-1.3	-37.2	2.0	4.9
AATTGGCCCAGAAACCATCC	-8.0	-1.3	-36.5	2.0	6.2
AAATTGGCCCAGAAACCATC	-8.0	-1.3	-34.1	1.8	4.0
GAAATTGGCCCAGAAACCAT	-8.0	-1.3	-34.1	3.8	2.7
GGAAATTGGCCCAGAAACCA	-12.0	-1.0	-36.3	6.2	4.9
TGGAAATTGGCCCAGAAACC	-8.6	-1.7	-36.3	4.9	6.0
ATGGAAATTGGCCCAGAAAC	-8.0	-1.7	-34.1	2.7	3.6
CATGGAAATTGGCCCAGAAA	-8.0	-1.7	-34.0	3.7	1.8

Download this file: oligoscreen.txt

Command Line:
oligoscreen KIF1A_15_ASOs.txt oligoscreen.txt --temperature 310.15

RNAstructure

Web Servers for RNA Secondary Structure Prediction

RNAstructure oligoscreen Results(Predict stability of hybridization and self-structure for a list of oligonucleotides.)

RNAstructure oligoscreen Results
(Predict stability of hybridization and self-structure for a list of oligonucleotides.)