Pseudoknot Energy Details for Structure 1: Knotted Pairs: 29:94 30:93 41:82 42:81 Energy of Broken Structure: -16.7 Energy of Pseudo-Helices: -3.9 Pseudoknot Energy Penalty: 14.2 Total Free Energy: -6.4 Details follow for Broken (Pseudoknot-free) Structure. Thermodynamic details for structure # 1 Exterior loop = 0.0 Stack = -1.5 for stack of 1-112 Stack = -1.3 for stack of 2-111 Stack = -1.1 for stack of 3-110 Stack = -2.4 for stack of 4-109 Stack = -2.1 for stack of 5-108 Stack = -0.9 for stack of 6-107 Stack = -2.4 for stack of 7-106 Helix total = -11.7 Multiloop = 2.3 for closure of 8-105 Stack = -2.1 for stack of 86-97 Stack = -2.1 for stack of 87-96 Helix total = -4.2 Hairpin = 3.8 for closure of 88-95 Stack = -2.4 for stack of 31-84 Helix total = -2.4 Multiloop = 4.5 for closure of 32-83 Stack = -0.9 for stack of 64-80 Stack = -0.9 for stack of 65-79 Stack = -2.1 for stack of 66-78 Stack = -3.3 for stack of 67-77 Helix total = -7.2 Hairpin = 4.4 for closure of 68-76 Stack = -0.9 for stack of 49-60 Stack = -2.1 for stack of 50-59 Stack = -2.5 for stack of 51-58 Helix total = -5.5 Hairpin = 5.3 for closure of 52-57 Stack = -2.2 for stack of 33-46 Stack = -2.1 for stack of 34-45 Stack = -3.3 for stack of 35-44 Helix total = -7.6 Hairpin = 3.8 for closure of 36-43 Stack = -3.3 for stack of 15-27 Stack = -3.3 for stack of 16-26 Helix total = -6.6 Hairpin = 4.4 for closure of 17-25 Total energy = -16.7