RNAstructure TurboFold Results
(Calculate the conserved structures of three or more unaligned sequences using iteratively refined partition functions.)

Alignment:

AE001437_1_2985433-2985232      UUAGGUUUGUGGUUGAAAGUCGAUGCCAGUCGCAGGCAAAACGAUCCACGUAAGUUAAAC
URS0000D6D2D7_508765_4-206      CUAGGUUUGUGGUUGAAAGUCGAUGCUAGUCGCAGGCAAAACGAUCCACUUAAGUUAGAU
URS00033A67A2_1096341_6-203     UUAGGUCUGUGGUUGAAAAUCGAUGCCAGCCGCAGGCGAAACGAUCCACGUAAGCCAAAC
URS0000D6B1C1_12908_7-194       U-GGGUCUGUGGUUGAAAGUCGAAGCCAGUCGCAGGCGAAACGAUCCACGUAAGCGGGGC
URS0000D68DA9_12908_9-194       ---GGUCUGUGGUUGAAAGUCGAUGCCAGUCGCAGGCAAAACGAUCCACAUAAGCAACCC
URS0000D6BFB9_12908_8-195       --AGGUCUGUGGCUGAAAGUCGAUGGCAGUCGCAG--CAAACGAUCCACGUAACGCAGUC
URS0000D6761C_12908_9-200       ---GGUCUGUGGUUGAAAGCCGAUGCCAGUCGCAGGCGAAACGGUCCACGUAAGCUGGGG
URS00031A4B9E_35761_57-247      --------------GCAAGCCGAUGCCAGUCGCAGGCGAAACGGUCCACGUAAGUCGACG
HF988688_1_184689-184462        UCAGGUCUGUGGUUGCUAGUCCAAGGCAGAUGCGGUCAAAAGGAUCCACGUAAGUCACCA
NFKF01000003_1_240818-241070    --AGGUCUGUGGUUGCAAGUCCAUGCCAGACGAGGGCAAAGGGAUCCACGUAAGCCCGGG
URS0000D6669B_12908_8-156       --GGGUCUGAGGUUGAAAGUCCAAGCCAGCUACGGGCAAAGGGAUCCGCGUAAGCUGUCG

AE001437_1_2985433-2985232      AAAGUUUUAAUGAGCAUGGUGCGGCUUAGAAGUAAGUCCUGCCGCUU---UA--G-GCGA
URS0000D6D2D7_508765_4-206      AAAAUUCUAAUGAGCAUGGUGCGGUAUAGAAGUGAGUCCUGCCAUUC---AU--G-GUGA
URS00033A67A2_1096341_6-203     AAAG-UUUGGUGAGCAUGGUGCGGUUUAGAAGUAAGUCCUGCCGGGGCAUUA--G-GCGA
URS0000D6B1C1_12908_7-194       AAUGUUCCCGUGAGCAUGGUGCGGUCUAGAUAUAAGUCCAACCGGUC---UU--U-CCGA
URS0000D68DA9_12908_9-194       AAGG-GGUUGUGAGCAUGGUGCGGCUUAGGUGUAAGUCCUGCCGGUA---AA--A-CCGA
URS0000D6BFB9_12908_8-195       AAAGGGCUGUUGAGCAUGGUGCGGUUUAGAAGUAAGUCCUGCCGGGA---AA--A-CCGA
URS0000D6761C_12908_9-200       AAAUUCUCAGUGAGCACGGUGCGGUUUAGACGUAAGCCCGGCCGGACGA-AAAGU-UCGA
URS00031A4B9E_35761_57-247      UUCGCGUCGACGAUCACGGUGCGGCUUAGUCGUAAGUCCUGCCUCGG---AC--C-UCGA
HF988688_1_184689-184462        AAAGCUGGGGCGAUCAUGGCGCAUCCUAGGGGUAAGUCGCACCGUCU---GA--A-CAUA
NFKF01000003_1_240818-241070    CGUGCCCGUGCGAUCAUGGCUCGUCCUAGAGGUAAGUCGUACCGCCC---AC--GCACGA
URS0000D6669B_12908_8-156       AG---GGCAGUGAUCAUGGCGUAGUUUAGAAGUAAGUCCUA-------------------

AE001437_1_2985433-2985232      GAGUAUUAGUAGUGAGAGGGU--AAU--UCCGGGUAGCGAAACUUCCAGCAGGCGAGUGU
URS0000D6D2D7_508765_4-206      GAGGGUUAGUAGUGAGGAAUU--AAC--UUUUAGUAGCAAAAGCUCCAGCAGGCGAGUGU
URS00033A67A2_1096341_6-203     GAGGGGGAUUAGUGAGAGG----AAUAAACC-UUAAGCAAAACCUCCAGCAGGCGGGUGU
URS0000D6B1C1_12908_7-194       GAGGGGCAGUAGUGAGAGGCG--AAC--GCCGGGUAGCGAACCCUCCAGUUGGCGAGUGU
URS0000D68DA9_12908_9-194       GAGGAGUAGUAGUGG----GG--AGU--CUCGGUGAGCGAACCUUCCAGCAGGCGAGUGU
URS0000D6BFB9_12908_8-195       GAGAGUGAGUUGUGAGAGGCA--AGC--GCCGGGUAGCUAAAGCUCCAGCAGGCGAGUGU
URS0000D6761C_12908_9-200       GAGAGC--GGCGUGGGG--GC--CAU--GAUGGCUAGCA-AUGCUCCUGCCGGCGAAUGU
URS00031A4B9E_35761_57-247      GAAGGCCAUCAGUGG----CAGCAAG--CU------GCGAACGCCUCAGCAGGCGGGUGU
HF988688_1_184689-184462        GGGUUGCACGGGCGAGAGAAC--GAU--GUCGUUUUGGCUUAGUUCCAGUGCGCGAGUGU
NFKF01000003_1_240818-241070    GAGGGGCUAGAGUGGAGGCGC--CGG--CGCCGAAAGCGACGCUCCCGGUACGCGGGUGU
URS0000D6669B_12908_8-156       ---------------------------------------------------GGCAAGUGC

AE001437_1_2985433-2985232      GGGGUCAAAGACCAGGUCAACUA
URS0000D6D2D7_508765_4-206      GGGGGCAAAAACCAGGUCAACUA
URS00033A67A2_1096341_6-203     GGGGGCAAAGACCAGGUCAGCUA
URS0000D6B1C1_12908_7-194       GGGGGCAAAGACCAGGUCA----
URS0000D68DA9_12908_9-194       GGGGGCAAAGACCAGGUCA----
URS0000D6BFB9_12908_8-195       GGGGUCAAAAGCCAGGUCAGC--
URS0000D6761C_12908_9-200       GGGGUCAAAAACCAGGUCAGCCA
URS00031A4B9E_35761_57-247      GGGGACGAAGACCAGGUCGG---
HF988688_1_184689-184462        GGGGGCAAAGACCAGGUCAGCUG
NFKF01000003_1_240818-241070    GGGGGCAAAGACCAGGUCAGCU-
URS0000D6669B_12908_8-156       GGGGUCAAAGACCUGGUCAGC--

Download alignment file TurboFold.aln

Structures derived from sequence 1:

Download All Structures: PDF PS CT

Download Individual Structures:

Structure 1: PDF SVG PS JPEG PNG CT

Structure 2: PDF SVG PS JPEG PNG CT

Structure 3: PDF SVG PS JPEG PNG CT

Structure 4: PDF SVG PS JPEG PNG CT

Structure 5: PDF SVG PS JPEG PNG CT

Structure 6: PDF SVG PS JPEG PNG CT

Structure 7: PDF SVG PS JPEG PNG CT

Structure 8: PDF SVG PS JPEG PNG CT

Structures derived from sequence 2:

Download All Structures: PDF PS CT

Download Individual Structures:

Structure 1: PDF SVG PS JPEG PNG CT

Structure 2: PDF SVG PS JPEG PNG CT

Structure 3: PDF SVG PS JPEG PNG CT

Structure 4: PDF SVG PS JPEG PNG CT

Structure 5: PDF SVG PS JPEG PNG CT

Structure 6: PDF SVG PS JPEG PNG CT

Structure 7: PDF SVG PS JPEG PNG CT

Structure 8: PDF SVG PS JPEG PNG CT

Structures derived from sequence 3:

Download All Structures: PDF PS CT

Download Individual Structures:

Structure 1: PDF SVG PS JPEG PNG CT

Structure 2: PDF SVG PS JPEG PNG CT

Structure 3: PDF SVG PS JPEG PNG CT

Structure 4: PDF SVG PS JPEG PNG CT

Structure 5: PDF SVG PS JPEG PNG CT

Structure 6: PDF SVG PS JPEG PNG CT

Structure 7: PDF SVG PS JPEG PNG CT

Structure 8: PDF SVG PS JPEG PNG CT

Structures derived from sequence 4:

Download All Structures: PDF PS CT

Download Individual Structures:

Structure 1: PDF SVG PS JPEG PNG CT

Structure 2: PDF SVG PS JPEG PNG CT

Structure 3: PDF SVG PS JPEG PNG CT

Structure 4: PDF SVG PS JPEG PNG CT

Structure 5: PDF SVG PS JPEG PNG CT

Structure 6: PDF SVG PS JPEG PNG CT

Structure 7: PDF SVG PS JPEG PNG CT

Structure 8: PDF SVG PS JPEG PNG CT

Structures derived from sequence 5:

Download All Structures: PDF PS CT

Download Individual Structures:

Structure 1: PDF SVG PS JPEG PNG CT

Structure 2: PDF SVG PS JPEG PNG CT

Structure 3: PDF SVG PS JPEG PNG CT

Structure 4: PDF SVG PS JPEG PNG CT

Structure 5: PDF SVG PS JPEG PNG CT

Structure 6: PDF SVG PS JPEG PNG CT

Structure 7: PDF SVG PS JPEG PNG CT

Structure 8: PDF SVG PS JPEG PNG CT

Structures derived from sequence 6:

Download All Structures: PDF PS CT

Download Individual Structures:

Structure 1: PDF SVG PS JPEG PNG CT

Structure 2: PDF SVG PS JPEG PNG CT

Structure 3: PDF SVG PS JPEG PNG CT

Structure 4: PDF SVG PS JPEG PNG CT

Structure 5: PDF SVG PS JPEG PNG CT

Structure 6: PDF SVG PS JPEG PNG CT

Structure 7: PDF SVG PS JPEG PNG CT

Structure 8: PDF SVG PS JPEG PNG CT

Structures derived from sequence 7:

Download All Structures: PDF PS CT

Download Individual Structures:

Structure 1: PDF SVG PS JPEG PNG CT

Structure 2: PDF SVG PS JPEG PNG CT

Structure 3: PDF SVG PS JPEG PNG CT

Structure 4: PDF SVG PS JPEG PNG CT

Structure 5: PDF SVG PS JPEG PNG CT

Structure 6: PDF SVG PS JPEG PNG CT

Structure 7: PDF SVG PS JPEG PNG CT

Structure 8: PDF SVG PS JPEG PNG CT

Structures derived from sequence 8:

Download All Structures: PDF PS CT

Download Individual Structures:

Structure 1: PDF SVG PS JPEG PNG CT

Structure 2: PDF SVG PS JPEG PNG CT

Structure 3: PDF SVG PS JPEG PNG CT

Structure 4: PDF SVG PS JPEG PNG CT

Structure 5: PDF SVG PS JPEG PNG CT

Structure 6: PDF SVG PS JPEG PNG CT

Structure 7: PDF SVG PS JPEG PNG CT

Structure 8: PDF SVG PS JPEG PNG CT

Structures derived from sequence 9:

Download All Structures: PDF PS CT

Download Individual Structures:

Structure 1: PDF SVG PS JPEG PNG CT

Structure 2: PDF SVG PS JPEG PNG CT

Structure 3: PDF SVG PS JPEG PNG CT

Structure 4: PDF SVG PS JPEG PNG CT

Structure 5: PDF SVG PS JPEG PNG CT

Structure 6: PDF SVG PS JPEG PNG CT

Structure 7: PDF SVG PS JPEG PNG CT

Structure 8: PDF SVG PS JPEG PNG CT

Structures derived from sequence 10:

Download All Structures: PDF PS CT

Download Individual Structures:

Structure 1: PDF SVG PS JPEG PNG CT

Structure 2: PDF SVG PS JPEG PNG CT

Structure 3: PDF SVG PS JPEG PNG CT

Structure 4: PDF SVG PS JPEG PNG CT

Structure 5: PDF SVG PS JPEG PNG CT

Structure 6: PDF SVG PS JPEG PNG CT

Structure 7: PDF SVG PS JPEG PNG CT

Structure 8: PDF SVG PS JPEG PNG CT

Structures derived from sequence 11:

Download All Structures: PDF PS CT

Download Individual Structures:

Structure 1: PDF SVG PS JPEG PNG CT

Structure 2: PDF SVG PS JPEG PNG CT

Structure 3: PDF SVG PS JPEG PNG CT

Structure 4: PDF SVG PS JPEG PNG CT

Structure 5: PDF SVG PS JPEG PNG CT

Structure 6: PDF SVG PS JPEG PNG CT

Structure 7: PDF SVG PS JPEG PNG CT

Structure 8: PDF SVG PS JPEG PNG CT

Command Line:
TurboFold-smp TurboFold.config

RNAstructure

Web Servers for RNA Secondary Structure Prediction

RNAstructure TurboFold Results(Calculate the conserved structures of three or more unaligned sequences using iteratively refined partition functions.)

Alignment:

Download alignment file TurboFold.aln

Structures derived from sequence 1:

Structures derived from sequence 2:

Structures derived from sequence 3:

Structures derived from sequence 4:

Structures derived from sequence 5:

Structures derived from sequence 6:

Structures derived from sequence 7:

Structures derived from sequence 8:

Structures derived from sequence 9:

Structures derived from sequence 10:

Structures derived from sequence 11:

RNAstructure TurboFold Results
(Calculate the conserved structures of three or more unaligned sequences using iteratively refined partition functions.)