RNAstructure bifold Results
(Predict the lowest free energy structure for two interacting sequences, allowing intramolecular base pairs.)


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Command Line:
bifold PredictBi.fasta PredictBi2.fasta bifold.ct --loop 30 --maximum 20 --percent 5 --temperature 310.15 --window 0


RNAstructure DuplexFold Results
(Predict the lowest free energy structure for two interacting sequences, not allowing intramolecular base pairs.)


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Command Line:
DuplexFold PredictBi.fasta PredictBi2.fasta DuplexFold.ct --loop 30 --maximum 20 --percent 5 --temperature 310.15 --window 0