InSeq = {Predict31.fasta;Predict32.fasta;Predict33.fasta;}
OutCT = {multilign1.ct;multilign2.ct;multilign3.ct;}
Alignment = multilign.ali
Gap = 0.4
Insert = 1
Iterations = 2
MaxDsvChange = 1
MaxPercent = 20
MaxStructures = 20
Processors = 4
Temperature = 310.15
WindowAlign = 1
WindowBP = 3