inseq1 = Predict21.fasta
inseq2 = Predict22.fasta
outct = dynalign1.ct
outct2 = dynalign2.ct
aout = dynalign.ali
num_processors = 4
awin = 1
bpwin = 3
fgap = 0.4
insert = 1
maxtrace = 20
percent = 20