RNAstructure dynalign Results
(Calculate the lowest free energy secondary structures common to two unaligned sequences.)

Alignment:

Alignment #1 Score= -218
CACCGCCCGU-CACCCUCCUCAAGUAUACUUCAAAGGACAUUUAACUAAAACCCCUACGCAUUUAUAUAGAGGAG-ACAAGUCGUAACAU
CACCGCC-CGUCACCCUCCUCAAGUAUACUUCUAAGGACAUUUAACUAAAACCCCUACGCAUUUAUAUAGAGGAGACGA-GUCGUAACAU
 ^^ ^^  ^^ ^    ^^^^^  ^^^^^      ^^^                ^^^       ^^^^^ ^^^^^^ ^^  ^^ ^^     


Alignment #2 Score= -204
CACCGCCCGUCACCCUCCUCAAGUAUACUUCAAAGGACAUUUAACUAAAACCCCUACGCAUUUAUAUAGAGGAGACAAGUCGUAACAU
CACCGCCCGUCACCCUCCUCAAGUAUACUUCUAAGGACAUUUAACUAAAACCCCUACGCAUUUAUAUAGAGGAGACGAGUCGUAACAU
              ^^^^^^  ^^^^^      ^^^   ^^^    ^^^   ^^^       ^^^^^ ^^^^^^

Download alignment file dynalign.ali

Structures derived from sequence 1:

Download All Structures: PDF PS CT

Download Individual Structures:

Structure 1: PDF SVG PS JPEG PNG CT

Structure 2: PDF SVG PS JPEG PNG CT

Structures derived from sequence 2:

Download All Structures: PDF PS CT

Download Individual Structures:

Structure 1: PDF SVG PS JPEG PNG CT

Structure 2: PDF SVG PS JPEG PNG CT

Command Line:
dynalign-smp dynalign.config

RNAstructure

Web Servers for RNA Secondary Structure Prediction

RNAstructure dynalign Results(Calculate the lowest free energy secondary structures common to two unaligned sequences.)

Alignment:

Download alignment file dynalign.ali

Structures derived from sequence 1:

Structures derived from sequence 2:

RNAstructure dynalign Results
(Calculate the lowest free energy secondary structures common to two unaligned sequences.)