RNAstructure Predict a Secondary Structure Common to Two Sequences Results

RNAstructure dynalign Results
(Calculate the lowest free energy secondary structures common to two unaligned sequences.)

Alignment:

Alignment #1 Score= -218
CACCGCCCGU-CACCCUCCUCAAGUAUACUUCAAAGGACAUUUAACUAAAACCCCUACGCAUUUAUAUAGAGGAG-ACAAGUCGUAACAU
CACCGCC-CGUCACCCUCCUCAAGUAUACUUCUAAGGACAUUUAACUAAAACCCCUACGCAUUUAUAUAGAGGAGACGA-GUCGUAACAU
 ^^ ^^  ^^ ^    ^^^^^  ^^^^^      ^^^                ^^^       ^^^^^ ^^^^^^ ^^  ^^ ^^     


Alignment #2 Score= -204
CACCGCCCGUCACCCUCCUCAAGUAUACUUCAAAGGACAUUUAACUAAAACCCCUACGCAUUUAUAUAGAGGAGACAAGUCGUAACAU
CACCGCCCGUCACCCUCCUCAAGUAUACUUCUAAGGACAUUUAACUAAAACCCCUACGCAUUUAUAUAGAGGAGACGAGUCGUAACAU
              ^^^^^^  ^^^^^      ^^^   ^^^    ^^^   ^^^       ^^^^^ ^^^^^^

Download alignment file dynalign.ali

Structures derived from sequence 1:

Download All Structures: PDF PS CT

Download Individual Structures:

Structure 1: PDF SVG PS JPEG PNG CT

Structure 2: PDF SVG PS JPEG PNG CT

Structures derived from sequence 2:

Download All Structures: PDF PS CT

Download Individual Structures:

Structure 1: PDF SVG PS JPEG PNG CT

Structure 2: PDF SVG PS JPEG PNG CT

Command Line:
dynalign-smp dynalign.config

RNAstructure PARTS Results
(Predict the common secondary structure, including base pair probabilities, for two unaligned sequences.)

Alignment:

seq1-seq2 MAP Alignment:
CACCGCCCGUCACCCUCCUCAAGUAUACUUCAAAGGACAUUUAACUAAAACCCCUACGCAUUUAUAUAGAGGAGACAAGUCGUAACAU
CACCGCCCGUCACCCUCCUCAAGUAUACUUCUAAGGACAUUUAACUAAAACCCCUACGCAUUUAUAUAGAGGAGACGAGUCGUAACAU

RNAstructure

Web Servers for RNA Secondary Structure Prediction

RNAstructure Predict a Secondary Structure Common to Two Sequences Results

RNAstructure dynalign Results
(Calculate the lowest free energy secondary structures common to two unaligned sequences.)

Alignment:

Download alignment file dynalign.ali

Structures derived from sequence 1:

Structures derived from sequence 2:

RNAstructure PARTS Results
(Predict the common secondary structure, including base pair probabilities, for two unaligned sequences.)

Alignment:

Download alignment file PARTS/PARTS.ali

Structures derived from sequence 1:

Structures derived from sequence 2:

RNAstructure

Web Servers for RNA Secondary Structure Prediction

RNAstructure Predict a Secondary Structure Common to Two Sequences Results

RNAstructure dynalign Results(Calculate the lowest free energy secondary structures common to two unaligned sequences.)

Alignment:

Download alignment file dynalign.ali

Structures derived from sequence 1:

Structures derived from sequence 2:

RNAstructure PARTS Results(Predict the common secondary structure, including base pair probabilities, for two unaligned sequences.)

Alignment:

Download alignment file PARTS/PARTS.ali

Structures derived from sequence 1:

Structures derived from sequence 2:

RNAstructure dynalign Results
(Calculate the lowest free energy secondary structures common to two unaligned sequences.)

RNAstructure PARTS Results
(Predict the common secondary structure, including base pair probabilities, for two unaligned sequences.)