JOB_START_TIME: 1777183028774
/var/www/html/RNAstructureWeb/Executables/current/partition-smp Predict1.fasta partition.pfs --DNA --temperature 310.15  [SUCCESS time: 2358274 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbabilityPlot partition.pfs partition.ps -max 2  [SUCCESS time: 2637 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbabilityPlot partition.pfs partition.svg -max 2 --svg  [SUCCESS time: 2676 ms]
/var/www/html/RNAstructureWeb/Executables/current/Fold-smp Predict1.fasta Fold.ct --DNA --loop 300 --maximum 300 --percent 10 --temperature 310.15 --window 3  [SUCCESS time: 721066 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct Fold.ps -p partition/partition.pfs  [SUCCESS time: 707077 ms]
ps2pdf Fold.ps Fold.pdf  [SUCCESS time: 66920 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 1.ps -n 1 -p partition/partition.pfs  [SUCCESS time: 2998 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 1.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 3001 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 2.ps -n 2 -p partition/partition.pfs  [SUCCESS time: 2992 ms]
ps2pdf 2.ps 2.pdf  [SUCCESS time: 302 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 2.svg -n 2 -p partition/partition.pfs --svg  [SUCCESS time: 2993 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 3.ps -n 3 -p partition/partition.pfs  [SUCCESS time: 2985 ms]
ps2pdf 3.ps 3.pdf  [SUCCESS time: 304 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 3.svg -n 3 -p partition/partition.pfs --svg  [SUCCESS time: 2987 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 4.svg -n 4 -p partition/partition.pfs --svg  [SUCCESS time: 2986 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 5.ps -n 5 -p partition/partition.pfs  [SUCCESS time: 2987 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 5.svg -n 5 -p partition/partition.pfs --svg  [SUCCESS time: 2989 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 6.ps -n 6 -p partition/partition.pfs  [SUCCESS time: 2994 ms]
ps2pdf 6.ps 6.pdf  [SUCCESS time: 302 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 6.svg -n 6 -p partition/partition.pfs --svg  [SUCCESS time: 2987 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 7.svg -n 7 -p partition/partition.pfs --svg  [SUCCESS time: 2990 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 8.ps -n 8 -p partition/partition.pfs  [SUCCESS time: 2988 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 8.svg -n 8 -p partition/partition.pfs --svg  [SUCCESS time: 2993 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 9.svg -n 9 -p partition/partition.pfs --svg  [SUCCESS time: 2989 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 10.svg -n 10 -p partition/partition.pfs --svg  [SUCCESS time: 2984 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 11.svg -n 11 -p partition/partition.pfs --svg  [SUCCESS time: 2993 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 12.ps -n 12 -p partition/partition.pfs  [SUCCESS time: 2986 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 12.svg -n 12 -p partition/partition.pfs --svg  [SUCCESS time: 2967 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 13.svg -n 13 -p partition/partition.pfs --svg  [SUCCESS time: 2945 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 14.svg -n 14 -p partition/partition.pfs --svg  [SUCCESS time: 2951 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 15.svg -n 15 -p partition/partition.pfs --svg  [SUCCESS time: 2945 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 16.ps -n 16 -p partition/partition.pfs  [SUCCESS time: 2973 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 16.svg -n 16 -p partition/partition.pfs --svg  [SUCCESS time: 2946 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 17.svg -n 17 -p partition/partition.pfs --svg  [SUCCESS time: 2950 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 18.svg -n 18 -p partition/partition.pfs --svg  [SUCCESS time: 2987 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 19.svg -n 19 -p partition/partition.pfs --svg  [SUCCESS time: 2946 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 20.svg -n 20 -p partition/partition.pfs --svg  [SUCCESS time: 2947 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 21.svg -n 21 -p partition/partition.pfs --svg  [SUCCESS time: 2946 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 22.svg -n 22 -p partition/partition.pfs --svg  [SUCCESS time: 2946 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 23.svg -n 23 -p partition/partition.pfs --svg  [SUCCESS time: 2949 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 24.svg -n 24 -p partition/partition.pfs --svg  [SUCCESS time: 2946 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 25.ps -n 25 -p partition/partition.pfs  [SUCCESS time: 2944 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 25.svg -n 25 -p partition/partition.pfs --svg  [SUCCESS time: 2991 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 26.ps -n 26 -p partition/partition.pfs  [SUCCESS time: 2962 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 26.svg -n 26 -p partition/partition.pfs --svg  [SUCCESS time: 2946 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 27.ps -n 27 -p partition/partition.pfs  [SUCCESS time: 2962 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 27.svg -n 27 -p partition/partition.pfs --svg  [SUCCESS time: 2946 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 28.ps -n 28 -p partition/partition.pfs  [SUCCESS time: 2946 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 28.svg -n 28 -p partition/partition.pfs --svg  [SUCCESS time: 2949 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 29.ps -n 29 -p partition/partition.pfs  [SUCCESS time: 2946 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 29.svg -n 29 -p partition/partition.pfs --svg  [SUCCESS time: 2942 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 31.svg -n 31 -p partition/partition.pfs --svg  [SUCCESS time: 2943 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 32.svg -n 32 -p partition/partition.pfs --svg  [SUCCESS time: 2946 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 33.svg -n 33 -p partition/partition.pfs --svg  [SUCCESS time: 2947 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 34.svg -n 34 -p partition/partition.pfs --svg  [SUCCESS time: 2945 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 35.svg -n 35 -p partition/partition.pfs --svg  [SUCCESS time: 2954 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 36.ps -n 36 -p partition/partition.pfs  [SUCCESS time: 2950 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 36.svg -n 36 -p partition/partition.pfs --svg  [SUCCESS time: 2952 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 37.ps -n 37 -p partition/partition.pfs  [SUCCESS time: 2947 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 37.svg -n 37 -p partition/partition.pfs --svg  [SUCCESS time: 2942 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 38.ps -n 38 -p partition/partition.pfs  [SUCCESS time: 2945 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 38.svg -n 38 -p partition/partition.pfs --svg  [SUCCESS time: 2946 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 42.svg -n 42 -p partition/partition.pfs --svg  [SUCCESS time: 2951 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 44.svg -n 44 -p partition/partition.pfs --svg  [SUCCESS time: 2962 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 45.svg -n 45 -p partition/partition.pfs --svg  [SUCCESS time: 2988 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 46.svg -n 46 -p partition/partition.pfs --svg  [SUCCESS time: 2962 ms]
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/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 286.ps -n 286 -p partition/partition.pfs  [SUCCESS time: 3012 ms]
ps2pdf 286.ps 286.pdf  [SUCCESS time: 300 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 286.svg -n 286 -p partition/partition.pfs --svg  [SUCCESS time: 2995 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 287.ps -n 287 -p partition/partition.pfs  [SUCCESS time: 2985 ms]
ps2pdf 287.ps 287.pdf  [SUCCESS time: 300 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 287.svg -n 287 -p partition/partition.pfs --svg  [SUCCESS time: 2987 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 288.ps -n 288 -p partition/partition.pfs  [SUCCESS time: 2984 ms]
ps2pdf 288.ps 288.pdf  [SUCCESS time: 300 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 288.svg -n 288 -p partition/partition.pfs --svg  [SUCCESS time: 2994 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 289.ps -n 289 -p partition/partition.pfs  [SUCCESS time: 2989 ms]
ps2pdf 289.ps 289.pdf  [SUCCESS time: 305 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 289.svg -n 289 -p partition/partition.pfs --svg  [SUCCESS time: 2989 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 290.ps -n 290 -p partition/partition.pfs  [SUCCESS time: 2990 ms]
ps2pdf 290.ps 290.pdf  [SUCCESS time: 303 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 290.svg -n 290 -p partition/partition.pfs --svg  [SUCCESS time: 2989 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 291.ps -n 291 -p partition/partition.pfs  [SUCCESS time: 2992 ms]
ps2pdf 291.ps 291.pdf  [SUCCESS time: 302 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 291.svg -n 291 -p partition/partition.pfs --svg  [SUCCESS time: 2974 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 292.ps -n 292 -p partition/partition.pfs  [SUCCESS time: 2948 ms]
ps2pdf 292.ps 292.pdf  [SUCCESS time: 301 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 292.svg -n 292 -p partition/partition.pfs --svg  [SUCCESS time: 2945 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 293.ps -n 293 -p partition/partition.pfs  [SUCCESS time: 2944 ms]
ps2pdf 293.ps 293.pdf  [SUCCESS time: 301 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 293.svg -n 293 -p partition/partition.pfs --svg  [SUCCESS time: 2993 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 294.ps -n 294 -p partition/partition.pfs  [SUCCESS time: 2985 ms]
ps2pdf 294.ps 294.pdf  [SUCCESS time: 303 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 294.svg -n 294 -p partition/partition.pfs --svg  [SUCCESS time: 2985 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 295.ps -n 295 -p partition/partition.pfs  [SUCCESS time: 2989 ms]
ps2pdf 295.ps 295.pdf  [SUCCESS time: 302 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 295.svg -n 295 -p partition/partition.pfs --svg  [SUCCESS time: 2989 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 296.ps -n 296 -p partition/partition.pfs  [SUCCESS time: 2986 ms]
ps2pdf 296.ps 296.pdf  [SUCCESS time: 305 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 296.svg -n 296 -p partition/partition.pfs --svg  [SUCCESS time: 2995 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 297.ps -n 297 -p partition/partition.pfs  [SUCCESS time: 2992 ms]
ps2pdf 297.ps 297.pdf  [SUCCESS time: 300 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 297.svg -n 297 -p partition/partition.pfs --svg  [SUCCESS time: 2994 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 298.ps -n 298 -p partition/partition.pfs  [SUCCESS time: 2988 ms]
ps2pdf 298.ps 298.pdf  [SUCCESS time: 300 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 298.svg -n 298 -p partition/partition.pfs --svg  [SUCCESS time: 2994 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 299.ps -n 299 -p partition/partition.pfs  [SUCCESS time: 2988 ms]
ps2pdf 299.ps 299.pdf  [SUCCESS time: 302 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 299.svg -n 299 -p partition/partition.pfs --svg  [SUCCESS time: 2995 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 300.ps -n 300 -p partition/partition.pfs  [SUCCESS time: 2987 ms]
ps2pdf 300.ps 300.pdf  [SUCCESS time: 302 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 300.svg -n 300 -p partition/partition.pfs --svg  [SUCCESS time: 2986 ms]
/var/www/html/RNAstructureWeb/Executables/current/MaxExpect-smp partition/partition.pfs MaxExpect.ct --DNA --gamma 1 --percent 10 --structures 300 --window 3  [SUCCESS time: 771905 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect.ct MaxExpect.ps -p partition/partition.pfs  [SUCCESS time: 2338 ms]
ps2pdf MaxExpect.ps MaxExpect.pdf  [SUCCESS time: 176 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect.ct MaxExpect.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 2336 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbKnot partition/partition.pfs ProbKnot.ct --DNA --iterations 1 --minimum 3  [SUCCESS time: 2278 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot.ct ProbKnot.ps -p partition/partition.pfs  [SUCCESS time: 2261 ms]
ps2pdf ProbKnot.ps ProbKnot.pdf  [SUCCESS time: 278 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot.ct ProbKnot.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 2262 ms]
JOB_END_TIME: 1777189547958
JOB_RUN_TIME: 6519184 ms
SERVER_NAME: Predict1
NODE: localhost
s-nail: Warning: variable superseded or obsoleted: smtp
s-nail: Warning -- v15-compat=yes will be default in v14.10.0!
s-nail: P(seudo)R(andom)N(umber)G(enerator): *TLS RAND_*
s-nail: Obsoletion warning: please do not use *smtp*, instead assign a smtp:// URL to *mta*!
s-nail: Obsoletion warning: Use of old-style credentials, which will vanish in v15!
s-nail:   Please read the manual section "On URL syntax and credential lookup"
s-nail: Resolving host smtp.urmc.rochester.edu:smtp ... done
s-nail: Connecting to 172.16.152.111:smtp ... connected.
mailx -s 'RNAstructure Web Servers Predict a Secondary Structure Calculation Complete' -b 'David_Mathews@urmc.rochester.edu' -S from=David_Mathews@urmc.rochester.edu -v 'morgan_abraham@mines.edu' < '/var/www/html/RNAstructureWeb/Servers/Predict1/ResultsPages/20260426.055708-3426723e/email.txt' (exit: 0)
JOB_COMPLETE