JOB_START_TIME: 1773146408234
/var/www/html/RNAstructureWeb/Executables/current/partition-smp Predict1.fasta partition.pfs --constraint Folding_constraint_DI_Id1.txt --SHAPE FL_1_to_391_K.txt --SHAPEintercept -0.6 --SHAPEslope 2 --temperature 303.15  [SUCCESS time: 3345 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbabilityPlot partition.pfs partition.ps -max 2  [SUCCESS time: 82 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbabilityPlot partition.pfs partition.svg -max 2 --svg  [SUCCESS time: 81 ms]
/var/www/html/RNAstructureWeb/Executables/current/Fold-smp Predict1.fasta Fold.ct --constraint Folding_constraint_DI_Id1.txt --loop 30 --maximum 5 --percent 10 --SHAPE FL_1_to_391_K.txt --SHAPEintercept -0.6 --SHAPEslope 2 --temperature 303.15 --window 3  [SUCCESS time: 1173 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct Fold.ps -p partition/partition.pfs  [SUCCESS time: 319 ms]
ps2pdf Fold.ps Fold.pdf  [SUCCESS time: 196 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 1.ps -n 1 -p partition/partition.pfs  [SUCCESS time: 88 ms]
ps2pdf 1.ps 1.pdf  [SUCCESS time: 102 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 1.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 87 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 2.ps -n 2 -p partition/partition.pfs  [SUCCESS time: 85 ms]
ps2pdf 2.ps 2.pdf  [SUCCESS time: 102 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 2.svg -n 2 -p partition/partition.pfs --svg  [SUCCESS time: 87 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 3.ps -n 3 -p partition/partition.pfs  [SUCCESS time: 85 ms]
ps2pdf 3.ps 3.pdf  [SUCCESS time: 102 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 3.svg -n 3 -p partition/partition.pfs --svg  [SUCCESS time: 87 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 4.ps -n 4 -p partition/partition.pfs  [SUCCESS time: 85 ms]
ps2pdf 4.ps 4.pdf  [SUCCESS time: 102 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 4.svg -n 4 -p partition/partition.pfs --svg  [SUCCESS time: 87 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 5.ps -n 5 -p partition/partition.pfs  [SUCCESS time: 85 ms]
ps2pdf 5.ps 5.pdf  [SUCCESS time: 102 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 5.svg -n 5 -p partition/partition.pfs --svg  [SUCCESS time: 87 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct Fold.ps -s FL_1_to_391_K.txt  [SUCCESS time: 51 ms]
ps2pdf Fold.ps Fold.pdf  [SUCCESS time: 196 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 1.ps -n 1 -s FL_1_to_391_K.txt  [SUCCESS time: 18 ms]
ps2pdf 1.ps 1.pdf  [SUCCESS time: 101 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 1.svg -n 1 -s FL_1_to_391_K.txt --svg  [SUCCESS time: 18 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 2.ps -n 2 -s FL_1_to_391_K.txt  [SUCCESS time: 17 ms]
ps2pdf 2.ps 2.pdf  [SUCCESS time: 101 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 2.svg -n 2 -s FL_1_to_391_K.txt --svg  [SUCCESS time: 18 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 3.ps -n 3 -s FL_1_to_391_K.txt  [SUCCESS time: 18 ms]
ps2pdf 3.ps 3.pdf  [SUCCESS time: 100 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 3.svg -n 3 -s FL_1_to_391_K.txt --svg  [SUCCESS time: 18 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 4.ps -n 4 -s FL_1_to_391_K.txt  [SUCCESS time: 17 ms]
ps2pdf 4.ps 4.pdf  [SUCCESS time: 100 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 4.svg -n 4 -s FL_1_to_391_K.txt --svg  [SUCCESS time: 18 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 5.ps -n 5 -s FL_1_to_391_K.txt  [SUCCESS time: 18 ms]
ps2pdf 5.ps 5.pdf  [SUCCESS time: 100 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 5.svg -n 5 -s FL_1_to_391_K.txt --svg  [SUCCESS time: 18 ms]
/var/www/html/RNAstructureWeb/Executables/current/MaxExpect-smp partition/partition.pfs MaxExpect.ct --gamma 1 --percent 10 --structures 5 --window 3  [SUCCESS time: 228 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect.ct MaxExpect.ps -p partition/partition.pfs  [SUCCESS time: 85 ms]
ps2pdf MaxExpect.ps MaxExpect.pdf  [SUCCESS time: 102 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect.ct MaxExpect.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 86 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect/MaxExpect.ct MaxExpect.ps -s FL_1_to_391_K.txt  [SUCCESS time: 18 ms]
ps2pdf MaxExpect.ps MaxExpect.pdf  [SUCCESS time: 102 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect/MaxExpect.ct MaxExpect.svg -n 1 -s FL_1_to_391_K.txt --svg  [SUCCESS time: 17 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbKnot partition/partition.pfs ProbKnot.ct --iterations 1 --minimum 3  [SUCCESS time: 78 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot.ct ProbKnot.ps -p partition/partition.pfs  [SUCCESS time: 84 ms]
ps2pdf ProbKnot.ps ProbKnot.pdf  [SUCCESS time: 103 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot.ct ProbKnot.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 86 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot/ProbKnot.ct ProbKnot.ps -s FL_1_to_391_K.txt  [SUCCESS time: 17 ms]
ps2pdf ProbKnot.ps ProbKnot.pdf  [SUCCESS time: 102 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot/ProbKnot.ct ProbKnot.svg -n 1 -s FL_1_to_391_K.txt --svg  [SUCCESS time: 16 ms]
JOB_END_TIME: 1773146417245
JOB_RUN_TIME: 9011 ms
SERVER_NAME: Predict1
NODE: localhost
s-nail: Warning: variable superseded or obsoleted: smtp
s-nail: Warning -- v15-compat=yes will be default in v14.10.0!
s-nail: P(seudo)R(andom)N(umber)G(enerator): *TLS RAND_*
s-nail: Obsoletion warning: please do not use *smtp*, instead assign a smtp:// URL to *mta*!
s-nail: Obsoletion warning: Use of old-style credentials, which will vanish in v15!
s-nail:   Please read the manual section "On URL syntax and credential lookup"
s-nail: Resolving host smtp.urmc.rochester.edu:smtp ... done
s-nail: Connecting to 172.16.138.222:smtp ... connected.
mailx -s 'RNAstructure Web Servers Predict a Secondary Structure Calculation Complete' -b 'David_Mathews@urmc.rochester.edu' -S from=David_Mathews@urmc.rochester.edu -v 'David_Mathews@urmc.rochester.edu' < '/var/www/html/RNAstructureWeb/Servers/Predict1/ResultsPages/20260310.124007-6f930a87/email.txt' (exit: 0)
JOB_COMPLETE