JOB_START_TIME: 1764569851834
/var/www/html/RNAstructureWeb/Executables/current/partition-smp zm_18S_clean.fa partition.pfs --SHAPE 18s_Zm18S_rRNA.shape --SHAPEintercept -0.6 --SHAPEslope 1.8 --temperature 310.15  [SUCCESS time: 51026 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbabilityPlot partition.pfs partition.ps -max 2  [SUCCESS time: 241 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbabilityPlot partition.pfs partition.svg -max 2 --svg  [SUCCESS time: 245 ms]
/var/www/html/RNAstructureWeb/Executables/current/Fold-smp zm_18S_clean.fa Fold.ct --loop 30 --maximum 20 --percent 10 --SHAPE 18s_Zm18S_rRNA.shape --SHAPEintercept -0.6 --SHAPEslope 1.8 --temperature 310.15 --window 3  [SUCCESS time: 15705 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct Fold.ps -p partition/partition.pfs  [SUCCESS time: 3896 ms]
ps2pdf Fold.ps Fold.pdf  [SUCCESS time: 1274 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 1.ps -n 1 -p partition/partition.pfs  [SUCCESS time: 240 ms]
ps2pdf 1.ps 1.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 1.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 240 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 2.ps -n 2 -p partition/partition.pfs  [SUCCESS time: 241 ms]
ps2pdf 2.ps 2.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 2.svg -n 2 -p partition/partition.pfs --svg  [SUCCESS time: 241 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 3.ps -n 3 -p partition/partition.pfs  [SUCCESS time: 240 ms]
ps2pdf 3.ps 3.pdf  [SUCCESS time: 138 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 3.svg -n 3 -p partition/partition.pfs --svg  [SUCCESS time: 241 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 4.ps -n 4 -p partition/partition.pfs  [SUCCESS time: 241 ms]
ps2pdf 4.ps 4.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 4.svg -n 4 -p partition/partition.pfs --svg  [SUCCESS time: 240 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 5.ps -n 5 -p partition/partition.pfs  [SUCCESS time: 240 ms]
ps2pdf 5.ps 5.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 5.svg -n 5 -p partition/partition.pfs --svg  [SUCCESS time: 240 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 6.ps -n 6 -p partition/partition.pfs  [SUCCESS time: 241 ms]
ps2pdf 6.ps 6.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 6.svg -n 6 -p partition/partition.pfs --svg  [SUCCESS time: 241 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 7.ps -n 7 -p partition/partition.pfs  [SUCCESS time: 241 ms]
ps2pdf 7.ps 7.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 7.svg -n 7 -p partition/partition.pfs --svg  [SUCCESS time: 239 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 8.ps -n 8 -p partition/partition.pfs  [SUCCESS time: 240 ms]
ps2pdf 8.ps 8.pdf  [SUCCESS time: 140 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 8.svg -n 8 -p partition/partition.pfs --svg  [SUCCESS time: 240 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 9.ps -n 9 -p partition/partition.pfs  [SUCCESS time: 239 ms]
ps2pdf 9.ps 9.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 9.svg -n 9 -p partition/partition.pfs --svg  [SUCCESS time: 239 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 10.ps -n 10 -p partition/partition.pfs  [SUCCESS time: 245 ms]
ps2pdf 10.ps 10.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 10.svg -n 10 -p partition/partition.pfs --svg  [SUCCESS time: 240 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 11.ps -n 11 -p partition/partition.pfs  [SUCCESS time: 240 ms]
ps2pdf 11.ps 11.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 11.svg -n 11 -p partition/partition.pfs --svg  [SUCCESS time: 239 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 12.ps -n 12 -p partition/partition.pfs  [SUCCESS time: 240 ms]
ps2pdf 12.ps 12.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 12.svg -n 12 -p partition/partition.pfs --svg  [SUCCESS time: 239 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 13.ps -n 13 -p partition/partition.pfs  [SUCCESS time: 240 ms]
ps2pdf 13.ps 13.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 13.svg -n 13 -p partition/partition.pfs --svg  [SUCCESS time: 240 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 14.ps -n 14 -p partition/partition.pfs  [SUCCESS time: 239 ms]
ps2pdf 14.ps 14.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 14.svg -n 14 -p partition/partition.pfs --svg  [SUCCESS time: 240 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 15.ps -n 15 -p partition/partition.pfs  [SUCCESS time: 240 ms]
ps2pdf 15.ps 15.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 15.svg -n 15 -p partition/partition.pfs --svg  [SUCCESS time: 240 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 16.ps -n 16 -p partition/partition.pfs  [SUCCESS time: 241 ms]
ps2pdf 16.ps 16.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 16.svg -n 16 -p partition/partition.pfs --svg  [SUCCESS time: 240 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 17.ps -n 17 -p partition/partition.pfs  [SUCCESS time: 241 ms]
ps2pdf 17.ps 17.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 17.svg -n 17 -p partition/partition.pfs --svg  [SUCCESS time: 240 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 18.ps -n 18 -p partition/partition.pfs  [SUCCESS time: 241 ms]
ps2pdf 18.ps 18.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 18.svg -n 18 -p partition/partition.pfs --svg  [SUCCESS time: 241 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 19.ps -n 19 -p partition/partition.pfs  [SUCCESS time: 240 ms]
ps2pdf 19.ps 19.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 19.svg -n 19 -p partition/partition.pfs --svg  [SUCCESS time: 244 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 20.ps -n 20 -p partition/partition.pfs  [SUCCESS time: 242 ms]
ps2pdf 20.ps 20.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 20.svg -n 20 -p partition/partition.pfs --svg  [SUCCESS time: 241 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct Fold.ps -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 501 ms]
ps2pdf Fold.ps Fold.pdf  [SUCCESS time: 1263 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 1.ps -n 1 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 40 ms]
ps2pdf 1.ps 1.pdf  [SUCCESS time: 137 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 1.svg -n 1 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 39 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 2.ps -n 2 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 40 ms]
ps2pdf 2.ps 2.pdf  [SUCCESS time: 137 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 2.svg -n 2 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 40 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 3.ps -n 3 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 39 ms]
ps2pdf 3.ps 3.pdf  [SUCCESS time: 136 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 3.svg -n 3 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 40 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 4.ps -n 4 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 39 ms]
ps2pdf 4.ps 4.pdf  [SUCCESS time: 136 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 4.svg -n 4 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 40 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 5.ps -n 5 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 40 ms]
ps2pdf 5.ps 5.pdf  [SUCCESS time: 135 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 5.svg -n 5 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 39 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 6.ps -n 6 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 40 ms]
ps2pdf 6.ps 6.pdf  [SUCCESS time: 136 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 6.svg -n 6 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 40 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 7.ps -n 7 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 40 ms]
ps2pdf 7.ps 7.pdf  [SUCCESS time: 136 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 7.svg -n 7 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 40 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 8.ps -n 8 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 39 ms]
ps2pdf 8.ps 8.pdf  [SUCCESS time: 136 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 8.svg -n 8 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 39 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 9.ps -n 9 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 40 ms]
ps2pdf 9.ps 9.pdf  [SUCCESS time: 136 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 9.svg -n 9 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 39 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 10.ps -n 10 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 39 ms]
ps2pdf 10.ps 10.pdf  [SUCCESS time: 136 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 10.svg -n 10 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 40 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 11.ps -n 11 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 39 ms]
ps2pdf 11.ps 11.pdf  [SUCCESS time: 136 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 11.svg -n 11 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 39 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 12.ps -n 12 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 39 ms]
ps2pdf 12.ps 12.pdf  [SUCCESS time: 137 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 12.svg -n 12 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 40 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 13.ps -n 13 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 40 ms]
ps2pdf 13.ps 13.pdf  [SUCCESS time: 133 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 13.svg -n 13 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 39 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 14.ps -n 14 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 40 ms]
ps2pdf 14.ps 14.pdf  [SUCCESS time: 136 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 14.svg -n 14 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 40 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 15.ps -n 15 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 39 ms]
ps2pdf 15.ps 15.pdf  [SUCCESS time: 136 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 15.svg -n 15 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 40 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 16.ps -n 16 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 41 ms]
ps2pdf 16.ps 16.pdf  [SUCCESS time: 138 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 16.svg -n 16 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 41 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 17.ps -n 17 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 40 ms]
ps2pdf 17.ps 17.pdf  [SUCCESS time: 137 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 17.svg -n 17 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 40 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 18.ps -n 18 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 39 ms]
ps2pdf 18.ps 18.pdf  [SUCCESS time: 138 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 18.svg -n 18 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 40 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 19.ps -n 19 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 40 ms]
ps2pdf 19.ps 19.pdf  [SUCCESS time: 140 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 19.svg -n 19 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 41 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 20.ps -n 20 -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 40 ms]
ps2pdf 20.ps 20.pdf  [SUCCESS time: 138 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 20.svg -n 20 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 41 ms]
/var/www/html/RNAstructureWeb/Executables/current/MaxExpect-smp partition/partition.pfs MaxExpect.ct --gamma 1 --percent 10 --structures 20 --window 3  [SUCCESS time: 5638 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect.ct MaxExpect.ps -p partition/partition.pfs  [SUCCESS time: 231 ms]
ps2pdf MaxExpect.ps MaxExpect.pdf  [SUCCESS time: 139 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect.ct MaxExpect.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 229 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect/MaxExpect.ct MaxExpect.ps -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 29 ms]
ps2pdf MaxExpect.ps MaxExpect.pdf  [SUCCESS time: 138 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect/MaxExpect.ct MaxExpect.svg -n 1 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 28 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbKnot partition/partition.pfs ProbKnot.ct --iterations 1 --minimum 3  [SUCCESS time: 213 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot.ct ProbKnot.ps -p partition/partition.pfs  [SUCCESS time: 224 ms]
ps2pdf ProbKnot.ps ProbKnot.pdf  [SUCCESS time: 133 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot.ct ProbKnot.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 224 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot/ProbKnot.ct ProbKnot.ps -s 18s_Zm18S_rRNA.shape  [SUCCESS time: 24 ms]
ps2pdf ProbKnot.ps ProbKnot.pdf  [SUCCESS time: 129 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot/ProbKnot.ct ProbKnot.svg -n 1 -s 18s_Zm18S_rRNA.shape --svg  [SUCCESS time: 23 ms]
JOB_END_TIME: 1764569950702
JOB_RUN_TIME: 98868 ms
SERVER_NAME: Predict1
NODE: localhost
s-nail: Warning: variable superseded or obsoleted: smtp
s-nail: Warning -- v15-compat=yes will be default in v14.10.0!
s-nail: P(seudo)R(andom)N(umber)G(enerator): *TLS RAND_*
s-nail: Obsoletion warning: please do not use *smtp*, instead assign a smtp:// URL to *mta*!
s-nail: Obsoletion warning: Use of old-style credentials, which will vanish in v15!
s-nail:   Please read the manual section "On URL syntax and credential lookup"
s-nail: Resolving host smtp.urmc.rochester.edu:smtp ... done
s-nail: Connecting to 172.16.153.153:smtp ... connected.
mailx -s 'RNAstructure Web Servers Predict a Secondary Structure Calculation Complete' -b 'David_Mathews@urmc.rochester.edu' -S from=David_Mathews@urmc.rochester.edu -v '3031073558@qq.com' < '/var/www/html/RNAstructureWeb/Servers/Predict1/ResultsPages/20251201.061730-00aa25af/email.txt' (exit: 0)
JOB_COMPLETE