JOB_START_TIME: 1763143031124
/var/www/html/RNAstructureWeb/Executables/current/partition PCAT2_Ref_copy.txt partition.pfs --SHAPE barcode08_seq1.shape --SHAPEintercept -0.6 --SHAPEslope 1.8 --temperature 310.15  [SUCCESS time: 13117 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbabilityPlot partition.pfs partition.ps -max 2  [SUCCESS time: 525 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbabilityPlot partition.pfs partition.svg -max 2 --svg  [SUCCESS time: 568 ms]
/var/www/html/RNAstructureWeb/Executables/current/Fold PCAT2_Ref_copy.txt Fold.ct --loop 30 --maximum 20 --percent 10 --SHAPE barcode08_seq1.shape --SHAPEintercept -0.6 --SHAPEslope 1.8 --temperature 310.15 --window 3  [SUCCESS time: 9800 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct Fold.ps -p partition/partition.pfs  [SUCCESS time: 14784 ms]
ps2pdf Fold.ps Fold.pdf  [SUCCESS time: 1481 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 1.ps -n 1 -p partition/partition.pfs  [SUCCESS time: 668 ms]
ps2pdf 1.ps 1.pdf  [SUCCESS time: 214 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 1.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 651 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 2.ps -n 2 -p partition/partition.pfs  [SUCCESS time: 647 ms]
ps2pdf 2.ps 2.pdf  [SUCCESS time: 209 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 2.svg -n 2 -p partition/partition.pfs --svg  [SUCCESS time: 641 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 3.ps -n 3 -p partition/partition.pfs  [SUCCESS time: 678 ms]
ps2pdf 3.ps 3.pdf  [SUCCESS time: 215 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 3.svg -n 3 -p partition/partition.pfs --svg  [SUCCESS time: 637 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 4.ps -n 4 -p partition/partition.pfs  [SUCCESS time: 653 ms]
ps2pdf 4.ps 4.pdf  [SUCCESS time: 210 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 4.svg -n 4 -p partition/partition.pfs --svg  [SUCCESS time: 638 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 5.ps -n 5 -p partition/partition.pfs  [SUCCESS time: 662 ms]
ps2pdf 5.ps 5.pdf  [SUCCESS time: 210 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 5.svg -n 5 -p partition/partition.pfs --svg  [SUCCESS time: 639 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 6.ps -n 6 -p partition/partition.pfs  [SUCCESS time: 657 ms]
ps2pdf 6.ps 6.pdf  [SUCCESS time: 210 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 6.svg -n 6 -p partition/partition.pfs --svg  [SUCCESS time: 652 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 7.ps -n 7 -p partition/partition.pfs  [SUCCESS time: 659 ms]
ps2pdf 7.ps 7.pdf  [SUCCESS time: 450 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 7.svg -n 7 -p partition/partition.pfs --svg  [SUCCESS time: 638 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 8.ps -n 8 -p partition/partition.pfs  [SUCCESS time: 657 ms]
ps2pdf 8.ps 8.pdf  [SUCCESS time: 209 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 8.svg -n 8 -p partition/partition.pfs --svg  [SUCCESS time: 643 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 9.ps -n 9 -p partition/partition.pfs  [SUCCESS time: 656 ms]
ps2pdf 9.ps 9.pdf  [SUCCESS time: 210 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 9.svg -n 9 -p partition/partition.pfs --svg  [SUCCESS time: 639 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 10.ps -n 10 -p partition/partition.pfs  [SUCCESS time: 656 ms]
ps2pdf 10.ps 10.pdf  [SUCCESS time: 210 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 10.svg -n 10 -p partition/partition.pfs --svg  [SUCCESS time: 646 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 11.ps -n 11 -p partition/partition.pfs  [SUCCESS time: 659 ms]
ps2pdf 11.ps 11.pdf  [SUCCESS time: 213 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 11.svg -n 11 -p partition/partition.pfs --svg  [SUCCESS time: 638 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 12.ps -n 12 -p partition/partition.pfs  [SUCCESS time: 665 ms]
ps2pdf 12.ps 12.pdf  [SUCCESS time: 213 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 12.svg -n 12 -p partition/partition.pfs --svg  [SUCCESS time: 639 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 13.ps -n 13 -p partition/partition.pfs  [SUCCESS time: 676 ms]
ps2pdf 13.ps 13.pdf  [SUCCESS time: 213 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 13.svg -n 13 -p partition/partition.pfs --svg  [SUCCESS time: 643 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 14.ps -n 14 -p partition/partition.pfs  [SUCCESS time: 653 ms]
ps2pdf 14.ps 14.pdf  [SUCCESS time: 215 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 14.svg -n 14 -p partition/partition.pfs --svg  [SUCCESS time: 639 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 15.ps -n 15 -p partition/partition.pfs  [SUCCESS time: 673 ms]
ps2pdf 15.ps 15.pdf  [SUCCESS time: 215 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 15.svg -n 15 -p partition/partition.pfs --svg  [SUCCESS time: 639 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 16.ps -n 16 -p partition/partition.pfs  [SUCCESS time: 648 ms]
ps2pdf 16.ps 16.pdf  [SUCCESS time: 210 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 16.svg -n 16 -p partition/partition.pfs --svg  [SUCCESS time: 639 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 17.ps -n 17 -p partition/partition.pfs  [SUCCESS time: 653 ms]
ps2pdf 17.ps 17.pdf  [SUCCESS time: 209 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 17.svg -n 17 -p partition/partition.pfs --svg  [SUCCESS time: 643 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 18.ps -n 18 -p partition/partition.pfs  [SUCCESS time: 658 ms]
ps2pdf 18.ps 18.pdf  [SUCCESS time: 210 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 18.svg -n 18 -p partition/partition.pfs --svg  [SUCCESS time: 639 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 19.ps -n 19 -p partition/partition.pfs  [SUCCESS time: 657 ms]
ps2pdf 19.ps 19.pdf  [SUCCESS time: 209 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 19.svg -n 19 -p partition/partition.pfs --svg  [SUCCESS time: 653 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 20.ps -n 20 -p partition/partition.pfs  [SUCCESS time: 658 ms]
ps2pdf 20.ps 20.pdf  [SUCCESS time: 210 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 20.svg -n 20 -p partition/partition.pfs --svg  [SUCCESS time: 639 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct Fold.ps -s barcode08_seq1.shape  [SUCCESS time: 13054 ms]
ps2pdf Fold.ps Fold.pdf  [SUCCESS time: 1476 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 1.ps -n 1 -s barcode08_seq1.shape  [SUCCESS time: 585 ms]
ps2pdf 1.ps 1.pdf  [SUCCESS time: 210 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 1.svg -n 1 -s barcode08_seq1.shape --svg  [SUCCESS time: 568 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 2.ps -n 2 -s barcode08_seq1.shape  [SUCCESS time: 582 ms]
ps2pdf 2.ps 2.pdf  [SUCCESS time: 211 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 2.svg -n 2 -s barcode08_seq1.shape --svg  [SUCCESS time: 566 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 3.ps -n 3 -s barcode08_seq1.shape  [SUCCESS time: 558 ms]
ps2pdf 3.ps 3.pdf  [SUCCESS time: 214 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 3.svg -n 3 -s barcode08_seq1.shape --svg  [SUCCESS time: 564 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 4.ps -n 4 -s barcode08_seq1.shape  [SUCCESS time: 586 ms]
ps2pdf 4.ps 4.pdf  [SUCCESS time: 210 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 4.svg -n 4 -s barcode08_seq1.shape --svg  [SUCCESS time: 568 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 5.ps -n 5 -s barcode08_seq1.shape  [SUCCESS time: 587 ms]
ps2pdf 5.ps 5.pdf  [SUCCESS time: 210 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 5.svg -n 5 -s barcode08_seq1.shape --svg  [SUCCESS time: 570 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 6.ps -n 6 -s barcode08_seq1.shape  [SUCCESS time: 591 ms]
ps2pdf 6.ps 6.pdf  [SUCCESS time: 210 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 6.svg -n 6 -s barcode08_seq1.shape --svg  [SUCCESS time: 574 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 7.ps -n 7 -s barcode08_seq1.shape  [SUCCESS time: 600 ms]
ps2pdf 7.ps 7.pdf  [SUCCESS time: 208 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 7.svg -n 7 -s barcode08_seq1.shape --svg  [SUCCESS time: 573 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 8.ps -n 8 -s barcode08_seq1.shape  [SUCCESS time: 828 ms]
ps2pdf 8.ps 8.pdf  [SUCCESS time: 219 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 8.svg -n 8 -s barcode08_seq1.shape --svg  [SUCCESS time: 570 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 9.ps -n 9 -s barcode08_seq1.shape  [SUCCESS time: 595 ms]
ps2pdf 9.ps 9.pdf  [SUCCESS time: 210 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 9.svg -n 9 -s barcode08_seq1.shape --svg  [SUCCESS time: 573 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 10.ps -n 10 -s barcode08_seq1.shape  [SUCCESS time: 593 ms]
ps2pdf 10.ps 10.pdf  [SUCCESS time: 211 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 10.svg -n 10 -s barcode08_seq1.shape --svg  [SUCCESS time: 564 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 11.ps -n 11 -s barcode08_seq1.shape  [SUCCESS time: 587 ms]
ps2pdf 11.ps 11.pdf  [SUCCESS time: 205 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 11.svg -n 11 -s barcode08_seq1.shape --svg  [SUCCESS time: 562 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 12.ps -n 12 -s barcode08_seq1.shape  [SUCCESS time: 601 ms]
ps2pdf 12.ps 12.pdf  [SUCCESS time: 213 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 12.svg -n 12 -s barcode08_seq1.shape --svg  [SUCCESS time: 564 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 13.ps -n 13 -s barcode08_seq1.shape  [SUCCESS time: 577 ms]
ps2pdf 13.ps 13.pdf  [SUCCESS time: 219 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 13.svg -n 13 -s barcode08_seq1.shape --svg  [SUCCESS time: 599 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 14.ps -n 14 -s barcode08_seq1.shape  [SUCCESS time: 586 ms]
ps2pdf 14.ps 14.pdf  [SUCCESS time: 211 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 14.svg -n 14 -s barcode08_seq1.shape --svg  [SUCCESS time: 561 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 15.ps -n 15 -s barcode08_seq1.shape  [SUCCESS time: 600 ms]
ps2pdf 15.ps 15.pdf  [SUCCESS time: 217 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 15.svg -n 15 -s barcode08_seq1.shape --svg  [SUCCESS time: 564 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 16.ps -n 16 -s barcode08_seq1.shape  [SUCCESS time: 588 ms]
ps2pdf 16.ps 16.pdf  [SUCCESS time: 215 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 16.svg -n 16 -s barcode08_seq1.shape --svg  [SUCCESS time: 569 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 17.ps -n 17 -s barcode08_seq1.shape  [SUCCESS time: 577 ms]
ps2pdf 17.ps 17.pdf  [SUCCESS time: 211 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 17.svg -n 17 -s barcode08_seq1.shape --svg  [SUCCESS time: 630 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 18.ps -n 18 -s barcode08_seq1.shape  [SUCCESS time: 590 ms]
ps2pdf 18.ps 18.pdf  [SUCCESS time: 211 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 18.svg -n 18 -s barcode08_seq1.shape --svg  [SUCCESS time: 570 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 19.ps -n 19 -s barcode08_seq1.shape  [SUCCESS time: 811 ms]
ps2pdf 19.ps 19.pdf  [SUCCESS time: 210 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 19.svg -n 19 -s barcode08_seq1.shape --svg  [SUCCESS time: 569 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 20.ps -n 20 -s barcode08_seq1.shape  [SUCCESS time: 582 ms]
ps2pdf 20.ps 20.pdf  [SUCCESS time: 210 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 20.svg -n 20 -s barcode08_seq1.shape --svg  [SUCCESS time: 570 ms]
/var/www/html/RNAstructureWeb/Executables/current/MaxExpect partition/partition.pfs MaxExpect.ct --gamma 1 --percent 10 --structures 20 --window 3  [SUCCESS time: 956 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect.ct MaxExpect.ps -p partition/partition.pfs  [SUCCESS time: 646 ms]
ps2pdf MaxExpect.ps MaxExpect.pdf  [SUCCESS time: 212 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect.ct MaxExpect.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 626 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect/MaxExpect.ct MaxExpect.ps -s barcode08_seq1.shape  [SUCCESS time: 605 ms]
ps2pdf MaxExpect.ps MaxExpect.pdf  [SUCCESS time: 214 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect/MaxExpect.ct MaxExpect.svg -n 1 -s barcode08_seq1.shape --svg  [SUCCESS time: 553 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbKnot partition/partition.pfs ProbKnot.ct --iterations 1 --minimum 3  [SUCCESS time: 393 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot.ct ProbKnot.ps -p partition/partition.pfs  [SUCCESS time: 686 ms]
ps2pdf ProbKnot.ps ProbKnot.pdf  [SUCCESS time: 210 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot.ct ProbKnot.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 638 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot/ProbKnot.ct ProbKnot.ps -s barcode08_seq1.shape  [SUCCESS time: 590 ms]
ps2pdf ProbKnot.ps ProbKnot.pdf  [SUCCESS time: 209 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot/ProbKnot.ct ProbKnot.svg -n 1 -s barcode08_seq1.shape --svg  [SUCCESS time: 558 ms]
JOB_END_TIME: 1763143165596
JOB_RUN_TIME: 134472 ms
SERVER_NAME: Predict1
NODE: node01
Resolving host smtp.urmc.rochester.edu . . . done.
Connecting to 172.16.154.161:smtp . . .could not connect: No route to host
. . . message not sent.
mailx -s 'RNAstructure Web Servers Predict a Secondary Structure Calculation Complete' -b 'David_Mathews@urmc.rochester.edu,RNAWeb@urmc.rochester.edu' -S from=David_Mathews@urmc.rochester.edu -v 'David_Mathews@urmc.rochester.edu,RNAWeb@urmc.rochester.edu' < '/var/www/html/RNAstructureWeb/Servers/Predict1/ResultsPages/20251114.125733-2b4e1258/email.txt' (exit: 1)
JOB_COMPLETE