JOB_START_TIME: 1763012448767
/var/www/html/RNAstructureWeb/Executables/current/partition Predict1.fasta partition.pfs --SHAPE DMS50_1_3340.dms.txt --SHAPEintercept -0.8 --SHAPEslope 4.8 --temperature 310.15  [SUCCESS time: 2292484 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbabilityPlot partition.pfs partition.ps -max 2  [SUCCESS time: 3565 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbabilityPlot partition.pfs partition.svg -max 2 --svg  [SUCCESS time: 3587 ms]
/var/www/html/RNAstructureWeb/Executables/current/Fold Predict1.fasta Fold.ct --loop 30 --maximum 20 --percent 10 --SHAPE DMS50_1_3340.dms.txt --SHAPEintercept -0.8 --SHAPEslope 4.8 --temperature 310.15 --window 3  [SUCCESS time: 862136 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct Fold.ps -p partition/partition.pfs  [SUCCESS time: 88888 ms]
ps2pdf Fold.ps Fold.pdf  [SUCCESS time: 7925 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 1.ps -n 1 -p partition/partition.pfs  [SUCCESS time: 3446 ms]
ps2pdf 1.ps 1.pdf  [SUCCESS time: 532 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 1.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 3421 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 2.ps -n 2 -p partition/partition.pfs  [SUCCESS time: 3428 ms]
ps2pdf 2.ps 2.pdf  [SUCCESS time: 535 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 2.svg -n 2 -p partition/partition.pfs --svg  [SUCCESS time: 3433 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 3.ps -n 3 -p partition/partition.pfs  [SUCCESS time: 3562 ms]
ps2pdf 3.ps 3.pdf  [SUCCESS time: 526 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 3.svg -n 3 -p partition/partition.pfs --svg  [SUCCESS time: 3429 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 4.ps -n 4 -p partition/partition.pfs  [SUCCESS time: 3414 ms]
ps2pdf 4.ps 4.pdf  [SUCCESS time: 542 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 4.svg -n 4 -p partition/partition.pfs --svg  [SUCCESS time: 3443 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 5.ps -n 5 -p partition/partition.pfs  [SUCCESS time: 3444 ms]
ps2pdf 5.ps 5.pdf  [SUCCESS time: 532 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 5.svg -n 5 -p partition/partition.pfs --svg  [SUCCESS time: 3430 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 6.ps -n 6 -p partition/partition.pfs  [SUCCESS time: 3432 ms]
ps2pdf 6.ps 6.pdf  [SUCCESS time: 535 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 6.svg -n 6 -p partition/partition.pfs --svg  [SUCCESS time: 3435 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 7.ps -n 7 -p partition/partition.pfs  [SUCCESS time: 3457 ms]
ps2pdf 7.ps 7.pdf  [SUCCESS time: 536 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 7.svg -n 7 -p partition/partition.pfs --svg  [SUCCESS time: 3436 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 8.ps -n 8 -p partition/partition.pfs  [SUCCESS time: 3503 ms]
ps2pdf 8.ps 8.pdf  [SUCCESS time: 538 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 8.svg -n 8 -p partition/partition.pfs --svg  [SUCCESS time: 3434 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 9.ps -n 9 -p partition/partition.pfs  [SUCCESS time: 3438 ms]
ps2pdf 9.ps 9.pdf  [SUCCESS time: 529 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 9.svg -n 9 -p partition/partition.pfs --svg  [SUCCESS time: 3414 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 10.ps -n 10 -p partition/partition.pfs  [SUCCESS time: 3410 ms]
ps2pdf 10.ps 10.pdf  [SUCCESS time: 545 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 10.svg -n 10 -p partition/partition.pfs --svg  [SUCCESS time: 3423 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 11.ps -n 11 -p partition/partition.pfs  [SUCCESS time: 3416 ms]
ps2pdf 11.ps 11.pdf  [SUCCESS time: 604 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 11.svg -n 11 -p partition/partition.pfs --svg  [SUCCESS time: 3586 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 12.ps -n 12 -p partition/partition.pfs  [SUCCESS time: 3742 ms]
ps2pdf 12.ps 12.pdf  [SUCCESS time: 519 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 12.svg -n 12 -p partition/partition.pfs --svg  [SUCCESS time: 3485 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 13.ps -n 13 -p partition/partition.pfs  [SUCCESS time: 3547 ms]
ps2pdf 13.ps 13.pdf  [SUCCESS time: 531 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 13.svg -n 13 -p partition/partition.pfs --svg  [SUCCESS time: 3445 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 14.ps -n 14 -p partition/partition.pfs  [SUCCESS time: 3456 ms]
ps2pdf 14.ps 14.pdf  [SUCCESS time: 529 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 14.svg -n 14 -p partition/partition.pfs --svg  [SUCCESS time: 3540 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 15.ps -n 15 -p partition/partition.pfs  [SUCCESS time: 3463 ms]
ps2pdf 15.ps 15.pdf  [SUCCESS time: 517 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 15.svg -n 15 -p partition/partition.pfs --svg  [SUCCESS time: 3437 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 16.ps -n 16 -p partition/partition.pfs  [SUCCESS time: 3654 ms]
ps2pdf 16.ps 16.pdf  [SUCCESS time: 522 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 16.svg -n 16 -p partition/partition.pfs --svg  [SUCCESS time: 3420 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 17.ps -n 17 -p partition/partition.pfs  [SUCCESS time: 3613 ms]
ps2pdf 17.ps 17.pdf  [SUCCESS time: 745 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 17.svg -n 17 -p partition/partition.pfs --svg  [SUCCESS time: 3420 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 18.ps -n 18 -p partition/partition.pfs  [SUCCESS time: 3436 ms]
ps2pdf 18.ps 18.pdf  [SUCCESS time: 539 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 18.svg -n 18 -p partition/partition.pfs --svg  [SUCCESS time: 3422 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 19.ps -n 19 -p partition/partition.pfs  [SUCCESS time: 3366 ms]
ps2pdf 19.ps 19.pdf  [SUCCESS time: 592 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 19.svg -n 19 -p partition/partition.pfs --svg  [SUCCESS time: 3508 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 20.ps -n 20 -p partition/partition.pfs  [SUCCESS time: 3769 ms]
ps2pdf 20.ps 20.pdf  [SUCCESS time: 518 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 20.svg -n 20 -p partition/partition.pfs --svg  [SUCCESS time: 3443 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct Fold.ps -s DMS50_1_3340.dms.txt  [SUCCESS time: 54734 ms]
ps2pdf Fold.ps Fold.pdf  [SUCCESS time: 7907 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 1.ps -n 1 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1969 ms]
ps2pdf 1.ps 1.pdf  [SUCCESS time: 533 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 1.svg -n 1 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1974 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 2.ps -n 2 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2091 ms]
ps2pdf 2.ps 2.pdf  [SUCCESS time: 539 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 2.svg -n 2 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1970 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 3.ps -n 3 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1979 ms]
ps2pdf 3.ps 3.pdf  [SUCCESS time: 517 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 3.svg -n 3 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1965 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 4.ps -n 4 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1974 ms]
ps2pdf 4.ps 4.pdf  [SUCCESS time: 532 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 4.svg -n 4 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1945 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 5.ps -n 5 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1968 ms]
ps2pdf 5.ps 5.pdf  [SUCCESS time: 518 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 5.svg -n 5 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1942 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 6.ps -n 6 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1880 ms]
ps2pdf 6.ps 6.pdf  [SUCCESS time: 543 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 6.svg -n 6 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1953 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 7.ps -n 7 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1970 ms]
ps2pdf 7.ps 7.pdf  [SUCCESS time: 531 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 7.svg -n 7 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2147 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 8.ps -n 8 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2036 ms]
ps2pdf 8.ps 8.pdf  [SUCCESS time: 534 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 8.svg -n 8 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2049 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 9.ps -n 9 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1957 ms]
ps2pdf 9.ps 9.pdf  [SUCCESS time: 532 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 9.svg -n 9 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1960 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 10.ps -n 10 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1987 ms]
ps2pdf 10.ps 10.pdf  [SUCCESS time: 534 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 10.svg -n 10 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1933 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 11.ps -n 11 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1960 ms]
ps2pdf 11.ps 11.pdf  [SUCCESS time: 525 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 11.svg -n 11 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1956 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 12.ps -n 12 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2156 ms]
ps2pdf 12.ps 12.pdf  [SUCCESS time: 535 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 12.svg -n 12 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1942 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 13.ps -n 13 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2173 ms]
ps2pdf 13.ps 13.pdf  [SUCCESS time: 515 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 13.svg -n 13 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1942 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 14.ps -n 14 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1976 ms]
ps2pdf 14.ps 14.pdf  [SUCCESS time: 533 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 14.svg -n 14 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1925 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 15.ps -n 15 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1997 ms]
ps2pdf 15.ps 15.pdf  [SUCCESS time: 518 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 15.svg -n 15 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1960 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 16.ps -n 16 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2081 ms]
ps2pdf 16.ps 16.pdf  [SUCCESS time: 531 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 16.svg -n 16 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1939 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 17.ps -n 17 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1957 ms]
ps2pdf 17.ps 17.pdf  [SUCCESS time: 533 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 17.svg -n 17 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1953 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 18.ps -n 18 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1959 ms]
ps2pdf 18.ps 18.pdf  [SUCCESS time: 558 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 18.svg -n 18 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1952 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 19.ps -n 19 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1972 ms]
ps2pdf 19.ps 19.pdf  [SUCCESS time: 532 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 19.svg -n 19 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1953 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 20.ps -n 20 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1952 ms]
ps2pdf 20.ps 20.pdf  [SUCCESS time: 531 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 20.svg -n 20 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2159 ms]
/var/www/html/RNAstructureWeb/Executables/current/MaxExpect partition/partition.pfs MaxExpect.ct --gamma 1 --percent 10 --structures 20 --window 3  [SUCCESS time: 328424 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect.ct MaxExpect.ps -p partition/partition.pfs  [SUCCESS time: 3442 ms]
ps2pdf MaxExpect.ps MaxExpect.pdf  [SUCCESS time: 535 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect.ct MaxExpect.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 3795 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect/MaxExpect.ct MaxExpect.ps -s DMS50_1_3340.dms.txt  [SUCCESS time: 1963 ms]
ps2pdf MaxExpect.ps MaxExpect.pdf  [SUCCESS time: 519 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect/MaxExpect.ct MaxExpect.svg -n 1 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1889 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbKnot partition/partition.pfs ProbKnot.ct --iterations 1 --minimum 3  [SUCCESS time: 3030 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot.ct ProbKnot.ps -p partition/partition.pfs  [SUCCESS time: 3428 ms]
ps2pdf ProbKnot.ps ProbKnot.pdf  [SUCCESS time: 537 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot.ct ProbKnot.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 3462 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot/ProbKnot.ct ProbKnot.ps -s DMS50_1_3340.dms.txt  [SUCCESS time: 1945 ms]
ps2pdf ProbKnot.ps ProbKnot.pdf  [SUCCESS time: 536 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot/ProbKnot.ct ProbKnot.svg -n 1 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1916 ms]
JOB_END_TIME: 1763016379274
JOB_RUN_TIME: 3930507 ms
SERVER_NAME: Predict1
NODE: node01
Resolving host smtp.urmc.rochester.edu . . . done.
Connecting to 172.16.154.161:smtp . . .could not connect: No route to host
. . . message not sent.
mailx -s 'RNAstructure Web Servers Predict a Secondary Structure Calculation Complete' -b 'David_Mathews@urmc.rochester.edu,RNAWeb@urmc.rochester.edu' -S from=David_Mathews@urmc.rochester.edu -v 'David_Mathews@urmc.rochester.edu,RNAWeb@urmc.rochester.edu' < '/var/www/html/RNAstructureWeb/Servers/Predict1/ResultsPages/20251113.004111-716300e9/email.txt' (exit: 1)
JOB_COMPLETE