JOB_START_TIME: 1763000282377
/var/www/html/RNAstructureWeb/Executables/current/partition Predict1.fasta partition.pfs --SHAPE DMS50_1_3340.dms.txt --SHAPEintercept -0.8 --SHAPEslope 4.8 --temperature 310.15  [SUCCESS time: 3035833 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbabilityPlot partition.pfs partition.ps -max 2  [SUCCESS time: 4407 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbabilityPlot partition.pfs partition.svg -max 2 --svg  [SUCCESS time: 4366 ms]
/var/www/html/RNAstructureWeb/Executables/current/Fold Predict1.fasta Fold.ct --loop 30 --maximum 20 --percent 10 --SHAPE DMS50_1_3340.dms.txt --SHAPEintercept -0.8 --SHAPEslope 4.8 --temperature 310.15 --window 3  [SUCCESS time: 1105725 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct Fold.ps -p partition/partition.pfs  [SUCCESS time: 100168 ms]
ps2pdf Fold.ps Fold.pdf  [SUCCESS time: 10007 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 1.ps -n 1 -p partition/partition.pfs  [SUCCESS time: 3869 ms]
ps2pdf 1.ps 1.pdf  [SUCCESS time: 685 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 1.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 4064 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 2.ps -n 2 -p partition/partition.pfs  [SUCCESS time: 3870 ms]
ps2pdf 2.ps 2.pdf  [SUCCESS time: 626 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 2.svg -n 2 -p partition/partition.pfs --svg  [SUCCESS time: 3954 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 3.ps -n 3 -p partition/partition.pfs  [SUCCESS time: 4081 ms]
ps2pdf 3.ps 3.pdf  [SUCCESS time: 628 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 3.svg -n 3 -p partition/partition.pfs --svg  [SUCCESS time: 4187 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 4.ps -n 4 -p partition/partition.pfs  [SUCCESS time: 4054 ms]
ps2pdf 4.ps 4.pdf  [SUCCESS time: 692 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 4.svg -n 4 -p partition/partition.pfs --svg  [SUCCESS time: 3845 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 5.ps -n 5 -p partition/partition.pfs  [SUCCESS time: 3854 ms]
ps2pdf 5.ps 5.pdf  [SUCCESS time: 645 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 5.svg -n 5 -p partition/partition.pfs --svg  [SUCCESS time: 3842 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 6.ps -n 6 -p partition/partition.pfs  [SUCCESS time: 4047 ms]
ps2pdf 6.ps 6.pdf  [SUCCESS time: 633 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 6.svg -n 6 -p partition/partition.pfs --svg  [SUCCESS time: 3858 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 7.ps -n 7 -p partition/partition.pfs  [SUCCESS time: 3940 ms]
ps2pdf 7.ps 7.pdf  [SUCCESS time: 681 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 7.svg -n 7 -p partition/partition.pfs --svg  [SUCCESS time: 3982 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 8.ps -n 8 -p partition/partition.pfs  [SUCCESS time: 3829 ms]
ps2pdf 8.ps 8.pdf  [SUCCESS time: 629 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 8.svg -n 8 -p partition/partition.pfs --svg  [SUCCESS time: 3963 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 9.ps -n 9 -p partition/partition.pfs  [SUCCESS time: 3824 ms]
ps2pdf 9.ps 9.pdf  [SUCCESS time: 630 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 9.svg -n 9 -p partition/partition.pfs --svg  [SUCCESS time: 4092 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 10.ps -n 10 -p partition/partition.pfs  [SUCCESS time: 4146 ms]
ps2pdf 10.ps 10.pdf  [SUCCESS time: 652 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 10.svg -n 10 -p partition/partition.pfs --svg  [SUCCESS time: 3798 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 11.ps -n 11 -p partition/partition.pfs  [SUCCESS time: 4050 ms]
ps2pdf 11.ps 11.pdf  [SUCCESS time: 692 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 11.svg -n 11 -p partition/partition.pfs --svg  [SUCCESS time: 3933 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 12.ps -n 12 -p partition/partition.pfs  [SUCCESS time: 4100 ms]
ps2pdf 12.ps 12.pdf  [SUCCESS time: 630 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 12.svg -n 12 -p partition/partition.pfs --svg  [SUCCESS time: 3808 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 13.ps -n 13 -p partition/partition.pfs  [SUCCESS time: 4046 ms]
ps2pdf 13.ps 13.pdf  [SUCCESS time: 631 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 13.svg -n 13 -p partition/partition.pfs --svg  [SUCCESS time: 4203 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 14.ps -n 14 -p partition/partition.pfs  [SUCCESS time: 4313 ms]
ps2pdf 14.ps 14.pdf  [SUCCESS time: 628 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 14.svg -n 14 -p partition/partition.pfs --svg  [SUCCESS time: 3803 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 15.ps -n 15 -p partition/partition.pfs  [SUCCESS time: 4111 ms]
ps2pdf 15.ps 15.pdf  [SUCCESS time: 690 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 15.svg -n 15 -p partition/partition.pfs --svg  [SUCCESS time: 4074 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 16.ps -n 16 -p partition/partition.pfs  [SUCCESS time: 4039 ms]
ps2pdf 16.ps 16.pdf  [SUCCESS time: 625 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 16.svg -n 16 -p partition/partition.pfs --svg  [SUCCESS time: 4103 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 17.ps -n 17 -p partition/partition.pfs  [SUCCESS time: 3887 ms]
ps2pdf 17.ps 17.pdf  [SUCCESS time: 687 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 17.svg -n 17 -p partition/partition.pfs --svg  [SUCCESS time: 4062 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 18.ps -n 18 -p partition/partition.pfs  [SUCCESS time: 3812 ms]
ps2pdf 18.ps 18.pdf  [SUCCESS time: 620 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 18.svg -n 18 -p partition/partition.pfs --svg  [SUCCESS time: 3822 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 19.ps -n 19 -p partition/partition.pfs  [SUCCESS time: 3808 ms]
ps2pdf 19.ps 19.pdf  [SUCCESS time: 728 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 19.svg -n 19 -p partition/partition.pfs --svg  [SUCCESS time: 3942 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 20.ps -n 20 -p partition/partition.pfs  [SUCCESS time: 3891 ms]
ps2pdf 20.ps 20.pdf  [SUCCESS time: 680 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold.ct 20.svg -n 20 -p partition/partition.pfs --svg  [SUCCESS time: 3849 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct Fold.ps -s DMS50_1_3340.dms.txt  [SUCCESS time: 57543 ms]
ps2pdf Fold.ps Fold.pdf  [SUCCESS time: 9799 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 1.ps -n 1 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2058 ms]
ps2pdf 1.ps 1.pdf  [SUCCESS time: 690 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 1.svg -n 1 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2045 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 2.ps -n 2 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2020 ms]
ps2pdf 2.ps 2.pdf  [SUCCESS time: 684 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 2.svg -n 2 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2031 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 3.ps -n 3 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2014 ms]
ps2pdf 3.ps 3.pdf  [SUCCESS time: 633 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 3.svg -n 3 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2199 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 4.ps -n 4 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2039 ms]
ps2pdf 4.ps 4.pdf  [SUCCESS time: 695 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 4.svg -n 4 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2179 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 5.ps -n 5 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2003 ms]
ps2pdf 5.ps 5.pdf  [SUCCESS time: 638 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 5.svg -n 5 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1993 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 6.ps -n 6 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2010 ms]
ps2pdf 6.ps 6.pdf  [SUCCESS time: 663 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 6.svg -n 6 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2010 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 7.ps -n 7 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2066 ms]
ps2pdf 7.ps 7.pdf  [SUCCESS time: 619 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 7.svg -n 7 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2029 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 8.ps -n 8 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2052 ms]
ps2pdf 8.ps 8.pdf  [SUCCESS time: 671 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 8.svg -n 8 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2004 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 9.ps -n 9 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2027 ms]
ps2pdf 9.ps 9.pdf  [SUCCESS time: 629 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 9.svg -n 9 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2032 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 10.ps -n 10 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2021 ms]
ps2pdf 10.ps 10.pdf  [SUCCESS time: 629 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 10.svg -n 10 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2002 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 11.ps -n 11 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2018 ms]
ps2pdf 11.ps 11.pdf  [SUCCESS time: 631 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 11.svg -n 11 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2050 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 12.ps -n 12 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2018 ms]
ps2pdf 12.ps 12.pdf  [SUCCESS time: 631 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 12.svg -n 12 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2058 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 13.ps -n 13 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1993 ms]
ps2pdf 13.ps 13.pdf  [SUCCESS time: 617 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 13.svg -n 13 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2025 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 14.ps -n 14 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2001 ms]
ps2pdf 14.ps 14.pdf  [SUCCESS time: 667 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 14.svg -n 14 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1985 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 15.ps -n 15 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1986 ms]
ps2pdf 15.ps 15.pdf  [SUCCESS time: 642 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 15.svg -n 15 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2007 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 16.ps -n 16 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2027 ms]
ps2pdf 16.ps 16.pdf  [SUCCESS time: 695 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 16.svg -n 16 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2041 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 17.ps -n 17 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2206 ms]
ps2pdf 17.ps 17.pdf  [SUCCESS time: 692 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 17.svg -n 17 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2025 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 18.ps -n 18 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2005 ms]
ps2pdf 18.ps 18.pdf  [SUCCESS time: 692 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 18.svg -n 18 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2008 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 19.ps -n 19 -s DMS50_1_3340.dms.txt  [SUCCESS time: 1995 ms]
ps2pdf 19.ps 19.pdf  [SUCCESS time: 670 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 19.svg -n 19 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2239 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 20.ps -n 20 -s DMS50_1_3340.dms.txt  [SUCCESS time: 2397 ms]
ps2pdf 20.ps 20.pdf  [SUCCESS time: 643 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw Fold/Fold.ct 20.svg -n 20 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 2016 ms]
/var/www/html/RNAstructureWeb/Executables/current/MaxExpect partition/partition.pfs MaxExpect.ct --gamma 1 --percent 10 --structures 20 --window 3  [SUCCESS time: 444096 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect.ct MaxExpect.ps -p partition/partition.pfs  [SUCCESS time: 4096 ms]
ps2pdf MaxExpect.ps MaxExpect.pdf  [SUCCESS time: 631 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect.ct MaxExpect.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 3918 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect/MaxExpect.ct MaxExpect.ps -s DMS50_1_3340.dms.txt  [SUCCESS time: 1987 ms]
ps2pdf MaxExpect.ps MaxExpect.pdf  [SUCCESS time: 633 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw MaxExpect/MaxExpect.ct MaxExpect.svg -n 1 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1946 ms]
/var/www/html/RNAstructureWeb/Executables/current/ProbKnot partition/partition.pfs ProbKnot.ct --iterations 1 --minimum 3  [SUCCESS time: 3497 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot.ct ProbKnot.ps -p partition/partition.pfs  [SUCCESS time: 3944 ms]
ps2pdf ProbKnot.ps ProbKnot.pdf  [SUCCESS time: 684 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot.ct ProbKnot.svg -n 1 -p partition/partition.pfs --svg  [SUCCESS time: 3972 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot/ProbKnot.ct ProbKnot.ps -s DMS50_1_3340.dms.txt  [SUCCESS time: 2192 ms]
ps2pdf ProbKnot.ps ProbKnot.pdf  [SUCCESS time: 687 ms]
/var/www/html/RNAstructureWeb/Executables/current/draw ProbKnot/ProbKnot.ct ProbKnot.svg -n 1 -s DMS50_1_3340.dms.txt --svg  [SUCCESS time: 1966 ms]
JOB_END_TIME: 1763005367621
JOB_RUN_TIME: 5085244 ms
SERVER_NAME: Predict1
NODE: node01
Resolving host smtp.urmc.rochester.edu . . . done.
Connecting to 172.16.154.161:smtp . . .could not connect: No route to host
. . . message not sent.
mailx -s 'RNAstructure Web Servers Predict a Secondary Structure Calculation Complete' -b 'David_Mathews@urmc.rochester.edu,RNAWeb@urmc.rochester.edu' -S from=David_Mathews@urmc.rochester.edu -v 'David_Mathews@urmc.rochester.edu,RNAWeb@urmc.rochester.edu' < '/var/www/html/RNAstructureWeb/Servers/Predict1/ResultsPages/20251112.211824-0ed86b2c/email.txt' (exit: 1)
JOB_COMPLETE