- p -

• PairMultifindSeq1() : Multilign_object
• PairSeq1() : Multilign_object
• PartitionFunction() : RNA
• PartitionFunctionBimolecular() : HybridRNA
• PlaceSeqOnStack() : design
• predict_ncRNA_probabilities() : Multifind_object
• PredictProbablePairs() : RNA
• PrepInput() : Multilign_object
• PrepMultifindInput() : Multilign_object
• probability_of_all_hairpins() : ProbScan
• probability_of_all_helices() : ProbScan
• probability_of_all_internal_loops() : ProbScan
• probability_of_hairpin() : ProbScan
• probability_of_helix() : ProbScan
• probability_of_internal_loop() : ProbScan
• probability_of_multibranch_loop() : ProbScan
• probability_of_stack() : ProbScan
• probability_of_stemloop() : ProbScan
• ProbKnot() : RNA
• ProbKnotFromSample() : RNA
• ProbScan() : ProbScan
• ProgressiveMultilign() : Multilign_object