Data table for
symmetric interior loops of size 2
The Enthalpies at
37 degrees for RNA
Data Arrangement:
Y
------------------
(X) A
C G U
------------------
5' --> 3'
X
A A
U U
Y
3' <-- 5'
(A) . .
. .
(C) . .
. .
(G) . .
. .
(U) . .
. .
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A
C G U
A C G
U A C
G U A
C G U
A C G
U A C
G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
A A A
C A G A U A G A U
U U U G U C U A U U U
G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
-0.5 -0.5 -0.5 -0.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5
-0.5 -0.5 -0.5 -0.5 -0.5
-0.5 -0.5 -0.5 -0.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5
-0.5 -0.5 -0.5 -0.5 -0.5
-0.5 -0.5 -8.3 -0.5 -5.5 -5.5 -13.4 -5.5 -5.5
-5.5 -13.4 -5.5 -0.5 -0.5 -8.3 -0.5 -0.5 -0.5 -8.3 -0.5 -0.5 -0.5 -8.3
-0.5
-0.5 -0.5 -0.5 -3.9 -5.5 -5.5 -5.5 -12.3 -5.5
-5.5 -5.5 -8.9
-0.5 -0.5 -0.5 -7.3 -0.5 -0.5 -0.5 -3.9 -0.5 -0.5 -0.5 -7.3
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A
C G U
A C G
U A C
G U A
C G U
A C G
U A C
G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
C A C C C
G C U C G C U
G U G G G
C G A G U G G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
-5.5 -5.5 -5.5 -5.5 -10.5 -10.5 -10.5 -10.5 -10.5 -10.5 -10.5 -10.5 -5.5 -5.5
-5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5
-5.5 -5.5 -5.5 -5.5 -10.5 -10.5 -10.5 -10.5 -10.5 -10.5 -10.5 -10.5 -5.5 -5.5
-5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5
-5.5 -5.5 -13.4 -5.5 -10.5 -10.5 -18.4 -10.5 -10.5
-10.5 -18.4 -10.5 -5.5 -5.5 -13.4 -5.5 -5.5 -5.5 -13.4 -5.5 -5.5 -5.5 -13.4
-5.5
-5.5 -5.5 -5.5 -5.5 -10.5 -10.5 -10.5 -13.9 -10.5 -10.5 -10.5 -10.5 -5.5 -5.5
-5.5 -8.9 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -8.9
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A
C G U
A C G
U A C
G U A
C G U
A C G
U A C
G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
G A G C G G G
U G G G
U
C U C G C C C
A C U C G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
-5.5 -5.5 -5.5 -5.5 -10.5 -10.5 -10.5 -10.5 -10.5 -10.5
-10.5 -10.5 -5.5 -5.5 -5.5 -5.5 -5.5
-5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5
-5.5 -5.5 -5.5 -5.5 -10.5 -10.5 -10.5 -10.5 -10.5 -10.5
-10.5 -10.5 -5.5 -5.5 -5.5 -5.5 -5.5
-5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5
-5.5 -5.5 -13.4 -5.5 -10.5 -10.5 -18.4 -10.5
-10.5 -10.5 -18.4 -10.5 -5.5 -5.5 -13.4 -5.5 -5.5 -5.5 -13.4 -5.5 -5.5 -5.5
-13.4 -5.5
-5.5 -5.5 -5.5 -8.9 -10.5 -10.5 -10.5 -17.3 -10.5 -10.5
-10.5 -13.9 -5.5 -5.5 -5.5 -12.3 -5.5 -5.5 -5.5 -8.9 -5.5 -5.5 -5.5 -12.3
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A
C G U
A C G
U A C
G U A
C G U
A C G
U A C
G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
U A U C U G U U U
G U U
A U A G A C A A A
U A G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
-0.5 -0.5 -0.5 -0.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5
-5.5 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5
-0.5 -0.5 -0.5 -0.5 -0.5
-0.5 -0.5 -0.5 -0.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5
-5.5 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5
-0.5 -0.5 -0.5 -0.5 -0.5
-0.5 -0.5 -8.3 -0.5 -5.5 -5.5 -13.4 -5.5 -5.5
-5.5 -13.4 -5.5 -0.5 -0.5 -8.3 -0.5 -0.5 -0.5 -8.3 -0.5 -0.5 -0.5 -8.3
-0.5
-0.5 -0.5 -0.5 -0.5 -5.5 -5.5 -5.5 -8.9 -5.5 -5.5 -5.5
-5.5 -0.5 -0.5 -0.5 -3.9 -0.5 -0.5 -0.5
-0.5 -0.5 -0.5 -0.5 -3.9
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A
C G U
A C G
U A C
G U A
C G U
A C G
U A C
G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
G A G C G G G
U G G G
U
U U U
G U C U A U U U
G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
-0.5 -0.5 -0.5 -0.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5
-5.5 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5
-0.5 -0.5 -0.5 -0.5 -0.5
-0.5 -0.5 -0.5 -0.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5
-5.5 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5
-0.5 -0.5 -0.5 -0.5 -0.5
-0.5 -0.5 -8.3 -0.5 -5.5 -5.5 -13.4 -5.5 -5.5
-5.5 -13.4 -5.5 -0.5 -0.5 -8.3 -0.5 -0.5 -0.5 -8.3 -0.5 -0.5 -0.5 -8.3
-0.5
-0.5 -0.5 -0.5 -3.9 -5.5 -5.5 -5.5 -12.3 -5.5
-5.5 -5.5 -8.9 -0.5
-0.5 -0.5 -7.3 -0.5 -0.5 -0.5 -3.9 -0.5 -0.5 -0.5 -7.3
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A
C G U
A C G
U A C
G U A
C G U
A C G
U A C
G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
U A U C U G U U U
G U U
G U G G G
C G A G U G G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
-0.5 -0.5 -0.5 -0.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5
-5.5 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5
-0.5 -0.5 -0.5 -0.5 -0.5
-0.5 -0.5 -0.5 -0.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5 -5.5
-5.5 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5
-0.5 -0.5 -0.5 -0.5 -0.5
-0.5 -0.5 -8.3 -0.5 -5.5 -5.5 -13.4 -5.5 -5.5
-5.5 -13.4 -5.5 -0.5 -0.5 -8.3 -0.5 -0.5 -0.5 -8.3 -0.5 -0.5 -0.5 -8.3
-0.5
-0.5 -0.5 -0.5 -0.5 -5.5 -5.5 -5.5 -8.9 -5.5 -5.5 -5.5
-5.5 -0.5 -0.5 -0.5 -3.9 -0.5 -0.5 -0.5
-0.5 -0.5 -0.5 -0.5 -3.9