#Data Arrangement: #For the 4x4 tables, each starting pair needs its own table. #This is the AA table: # 5' --> 3' # AX # UY # 3' <-- 5' # Y-> # ---------------------------- # (X) A C G U # | ---------------------------- # V # (A) . . . -6.8 # (C) . . -11.4 . # (G) . -10.5 . -3.2 # (U) -9.4 . -8.8 . #An energy of "." is "infinity," i.e. not allowed. # 5' --> 3' AX UY # 3' <-- 5' # Y # ---------------------------- A C G U # ---------------------------- A . . . -6.8 C . . -11.4 . G . -10.5 . -3.2 U -9.4 . -8.8 . # 5' --> 3' CX GY # 3' <-- 5' # Y # ---------------------------- A C G U # ---------------------------- A . . . -10.4 C . . -13.4 . G . -10.6 . -5.6 U -10.5 . -12.1 . # 5' --> 3' GX CY # 3' <-- 5' # Y # ---------------------------- A C G U # ---------------------------- A . . . -12.4 C . . -14.9 . G . -13.4 . -8.3 U -11.4 . -12.6 . # 5' --> 3' GX UY # 3' <-- 5' # Y # ---------------------------- A C G U # ---------------------------- A . . . -12.8 C . . -12.6 . G . -12.1 . -13.5 U -8.8 . -14.6 . # 5' --> 3' UX AY # 3' <-- 5' # Y # ---------------------------- A C G U # ---------------------------- A . . . -7.7 C . . -12.4 . G . -10.4 . -7.0 U -6.8 . -12.8 . # 5' --> 3' UX GY # 3' <-- 5' # Y # ---------------------------- A C G U # ---------------------------- A . . . -7.0 C . . -8.3 . G . -5.6 . -9.3 U -3.2 . -13.5 .