#Data tables for asymmetric interior loops of size 3
#The Enthalpy at 37 degrees for RNA
#Data Arrangement:
#For the 4x4 tables, each starting pair needs its own table.
#This is the AA table:
# 5' --> 3'
# X
# A A
# U U
# YA
# 3' <-- 5'
# Y->
# ----------------------------
# (X) A C G U
# | ----------------------------
# V
# (A) 13.5 13.5 13.5 13.5
# (C) 13.5 13.5 13.5 13.5
# (G) 7.8 7.8 7.8 7.8
# (U) 13.5 13.5 13.5 3.4
#An energy of "." is "infinity," i.e. not allowed.
# 5' --> 3'
X
A A
U U
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
A C
U G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
A G
U C
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
A U
U A
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
A G
U U
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
A U
U G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
A A
U U
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
A C
U G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
A G
U C
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
A U
U A
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
A G
U U
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
A U
U G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
A A
U U
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 7.8 7.8 7.8 7.8
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
A C
U G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 2.8 2.8 2.8 2.8
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
A G
U C
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 2.8 2.8 2.8 2.8
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
A U
U A
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 7.8 7.8 7.8 7.8
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
A G
U U
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 7.8 7.8 7.8 7.8
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
A U
U G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 7.8 7.8 7.8 7.8
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
A A
U U
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 3.4 3.4 3.4 3.4
# 5' --> 3'
X
A C
U G
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U -1.6 -1.6 -1.6 -1.6
# 5' --> 3'
X
A G
U C
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U -1.6 -1.6 -1.6 -1.6
# 5' --> 3'
X
A U
U A
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 3.4 3.4 3.4 3.4
# 5' --> 3'
X
A G
U U
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 3.4 3.4 3.4 3.4
# 5' --> 3'
X
A U
U G
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 3.4 3.4 3.4 3.4
# 5' --> 3'
X
C A
G U
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
C C
G G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 2.6 3.5 2.5 3.5
C 1.6 3.5 3.5 3.5
G -1.6 3.5 -4.1 3.5
U 3.5 3.5 3.5 -6.7
# 5' --> 3'
X
C G
G C
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 3.5 3.5 -2.3 3.5
C 3.5 3.5 3.5 3.5
G -2.3 -2.3 -2.3 -2.3
U 3.5 3.5 3.5 -6.7
# 5' --> 3'
X
C U
G A
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
C G
G U
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
C U
G G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
C A
G U
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
C C
G G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 3.5 -2.5 -2.3 3.5
C 3.5 7.8 3.5 3.5
G -2.3 3.5 -2.3 3.5
U 3.5 5.8 3.5 -5.8
# 5' --> 3'
X
C G
G C
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 3.5 3.5 -2.3 3.5
C 3.5 3.5 3.5 3.5
G -2.3 3.5 -2.3 3.5
U 3.5 3.5 3.5 -6.7
# 5' --> 3'
X
C U
G A
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
C G
G U
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
C U
G G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
C A
G U
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 2.8 2.8 2.8 2.8
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
C C
G G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A -2.3 -2.3 -2.3 -2.3
C 3.5 3.5 3.5 3.5
G -3.1 -2.3 -2.3 -2.3
U 3.5 3.5 3.5 -6.7
# 5' --> 3'
X
C G
G C
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A -2.3 -2.3 -2.3 -2.3
C 3.5 3.5 3.5 3.5
G -2.3 -2.3 -2.3 -2.3
U 3.5 3.5 3.5 -6.7
# 5' --> 3'
X
C U
G A
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 2.8 2.8 2.8 2.8
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
C G
G U
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 2.8 2.8 2.8 2.8
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
C U
G G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 2.8 2.8 2.8 2.8
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
C A
G U
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U -1.6 -1.6 -1.6 -1.6
# 5' --> 3'
X
C C
G G
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 3.5 3.5 -2.3 3.5
C 6.4 3.5 3.5 3.5
G -2.3 3.5 -2.3 3.5
U -6.7 -6.9 -6.7 -7.0
# 5' --> 3'
X
C G
G C
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 3.5 3.5 -2.3 3.5
C 3.5 3.5 3.5 3.5
G -2.3 3.5 -2.3 3.5
U -6.7 -6.7 -6.7 -6.7
# 5' --> 3'
X
C U
G A
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U -1.6 -1.6 -1.6 -1.6
# 5' --> 3'
X
C G
G U
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U -1.6 -1.6 -1.6 -1.6
# 5' --> 3'
X
C U
G G
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U -1.6 -1.6 -1.6 -1.6
# 5' --> 3'
X
G A
C U
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G C
C G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 3.5 3.5 3.5 3.5
C 3.5 3.5 3.5 3.5
G -2.3 3.5 -2.3 3.5
U 3.5 3.5 3.5 -6.7
# 5' --> 3'
X
G G
C C
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 6.9 3.5 2.4 3.5
C 3.5 3.5 3.5 3.5
G -2.3 -2.3 -2.3 -2.3
U 3.5 3.5 3.5 -6.7
# 5' --> 3'
X
G U
C A
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G G
C U
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 6.9 8.5 2.4 8.5
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G U
C G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G A
C U
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G C
C G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 3.5 3.5 3.5 3.5
C 3.5 3.5 3.5 3.5
G -2.3 3.5 -2.3 3.5
U 3.5 3.5 3.5 -6.7
# 5' --> 3'
X
G G
C C
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 3.5 3.5 3.5 3.5
C 3.5 3.5 3.5 3.5
G -2.3 3.5 -2.3 3.5
U 3.5 3.5 3.5 -6.7
# 5' --> 3'
X
G U
C A
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G G
C U
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G U
C G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G A
C U
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 2.8 2.8 2.8 2.8
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G C
C G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A -2.3 -2.3 -2.3 -2.3
C 3.5 3.5 3.5 3.5
G -2.3 -2.3 -2.3 -2.3
U 3.5 3.5 3.5 -6.7
# 5' --> 3'
X
G G
C C
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A -5.0 -2.3 -2.3 -2.3
C 3.5 3.5 3.5 3.5
G -2.3 -2.3 -2.3 -2.3
U 3.5 3.5 3.5 -6.7
# 5' --> 3'
X
G U
C A
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 2.8 2.8 2.8 2.8
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G G
C U
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A -5.0 2.8 2.8 2.8
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G U
C G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 2.8 2.8 2.8 2.8
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G A
C U
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U -1.6 -1.6 -1.6 -1.6
# 5' --> 3'
X
G C
C G
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 3.5 3.5 3.5 3.5
C 3.5 3.5 3.5 3.5
G -2.3 3.5 -2.3 3.5
U -6.7 -6.7 -6.7 -6.7
# 5' --> 3'
X
G G
C C
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 3.5 3.5 3.5 3.5
C 3.5 1.3 3.5 3.5
G -2.3 3.5 -2.3 3.5
U -6.7 -6.7 -6.7 -6.7
# 5' --> 3'
X
G U
C A
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U -1.6 -1.6 -1.6 -1.6
# 5' --> 3'
X
G G
C U
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 1.3 8.5 8.5
G 2.8 8.5 2.8 8.5
U -1.6 -1.6 -1.6 -1.6
# 5' --> 3'
X
G U
C G
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U -1.6 -1.6 -1.6 -1.6
# 5' --> 3'
X
U A
A U
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U C
A G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
U G
A C
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
U U
A A
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U G
A U
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U U
A G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U A
A U
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U C
A G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
U G
A C
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
U U
A A
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U G
A U
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U U
A G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U A
A U
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 7.8 7.8 7.8 7.8
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U C
A G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 2.8 2.8 2.8 2.8
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
U G
A C
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 2.8 2.8 2.8 2.8
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
U U
A A
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 7.8 7.8 7.8 7.8
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U G
A U
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 7.8 7.8 7.8 7.8
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U U
A G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 7.8 7.8 7.8 7.8
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U A
A U
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 3.4 3.4 3.4 3.4
# 5' --> 3'
X
U C
A G
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U -1.6 -1.6 -1.6 -1.6
# 5' --> 3'
X
U G
A C
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U -1.6 -1.6 -1.6 -1.6
# 5' --> 3'
X
U U
A A
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 3.4 3.4 3.4 3.4
# 5' --> 3'
X
U G
A U
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 3.4 3.4 3.4 3.4
# 5' --> 3'
X
U U
A G
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 3.4 3.4 3.4 3.4
# 5' --> 3'
X
G A
U U
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
G C
U G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G G
U C
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 6.9 8.5 2.4 8.5
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G U
U A
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
G G
U U
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 6.9 13.5 2.4 13.5
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
G U
U G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
G A
U U
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
G C
U G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G G
U C
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G U
U A
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
G G
U U
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
G U
U G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
G A
U U
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 7.8 7.8 7.8 7.8
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
G C
U G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 2.8 2.8 2.8 2.8
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G G
U C
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A -5.0 2.8 2.8 2.8
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
G U
U A
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 7.8 7.8 7.8 7.8
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
G G
U U
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A -5.0 7.8 7.8 7.8
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
G U
U G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 7.8 7.8 7.8 7.8
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
G A
U U
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 3.4 3.4 3.4 3.4
# 5' --> 3'
X
G C
U G
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U -1.6 -1.6 -1.6 -1.6
# 5' --> 3'
X
G G
U C
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 8.5 8.5
C 8.5 1.3 8.5 8.5
G 2.8 8.5 2.8 8.5
U -1.6 -1.6 -1.6 -1.6
# 5' --> 3'
X
G U
U A
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 3.4 3.4 3.4 3.4
# 5' --> 3'
X
G G
U U
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 1.3 13.5 13.5
G 7.8 13.5 7.8 13.5
U 3.4 3.4 3.4 3.4
# 5' --> 3'
X
G U
U G
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 13.5 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 3.4 3.4 3.4 3.4
# 5' --> 3'
X
U A
G U
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U C
G G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
U G
G C
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
U U
G A
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U G
G U
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U U
G G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U A
G U
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U C
G G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
U G
G C
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
U U
G A
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U G
G U
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U U
G G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U A
G U
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 7.8 7.8 7.8 7.8
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U C
G G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 2.8 2.8 2.8 2.8
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
U G
G C
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 2.8 2.8 2.8 2.8
C 8.5 8.5 8.5 8.5
G 2.8 2.8 2.8 2.8
U 8.5 8.5 8.5 -1.6
# 5' --> 3'
X
U U
G A
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 7.8 7.8 7.8 7.8
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U G
G U
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 7.8 7.8 7.8 7.8
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U U
G G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 7.8 7.8 7.8 7.8
C 13.5 13.5 13.5 13.5
G 7.8 7.8 7.8 7.8
U 13.5 13.5 13.5 3.4
# 5' --> 3'
X
U A
G U
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 3.4 3.4 3.4 3.4
# 5' --> 3'
X
U C
G G
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U -1.6 -1.6 -1.6 -1.6
# 5' --> 3'
X
U G
G C
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 8.5 8.5 2.8 8.5
C 8.5 8.5 8.5 8.5
G 2.8 8.5 2.8 8.5
U -1.6 -1.6 -1.6 -1.6
# 5' --> 3'
X
U U
G A
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 3.4 3.4 3.4 3.4
# 5' --> 3'
X
U G
G U
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 3.4 3.4 3.4 3.4
# 5' --> 3'
X
U U
G G
YU
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 13.5 13.5 7.8 13.5
C 13.5 13.5 13.5 13.5
G 7.8 13.5 7.8 13.5
U 3.4 3.4 3.4 3.4