Data table for symetric interior loops of size 2
Free energies at 37 degrees for DNA
Data Arrangement:
Y
------------------
(X) A C G T
------------------
5' --> 3'
X
A A
U U
Y
3' <-- 5'
(A) . . . .
(C) . . . .
(G) . . . .
(U) . . . .
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G T A C G T A C G T A C G T A C G T A C G T
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
A A A C A G A T A G A T
T T T G T C T A T T T G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7
1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7
1.7 1.7 -0.4 1.7 1.1 1.1 -1.0 1.1 1.1 1.1 -1.0 1.1 1.7 1.7 -0.4 1.7 1.7 1.7 -0.4 1.7 1.7 1.7 -0.4 1.7
1.7 1.7 1.7 1.5 1.1 1.1 1.1 1.0 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.2 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G T A C G T A C G T A C G T A C G T A C G T
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
C A C C C G C T C G C T
G T G G G C G A G T G G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
1.1 1.1 1.1 1.1 0.4 -0.4 0.4 0.4 1.1 0.4 0.4 0.4 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1
1.1 1.1 1.1 1.1 0.3 0.5 0.4 0.5 0.4 0.4 0.4 0.4 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1
1.1 1.1 -1.0 1.1 -0.1 0.4 -1.7 0.4 0.4 0.4 -1.4 0.4 1.1 1.1 -1.0 1.1 1.1 1.1 -1.0 1.1 1.1 1.1 -1.0 1.1
1.1 1.1 1.1 1.1 0.4 0.0 0.4 -0.3 0.4 0.4 0.4 0.4 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G T A C G T A C G T A C G T A C G T A C G T
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
G A G C G G G T G G G T
C T C G C C C A C T C G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
1.1 1.1 1.1 1.1 0.8 0.4 0.4 0.4 0.4 0.3 -0.1 0.4 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1
1.1 1.1 1.1 1.1 0.4 0.4 0.4 0.4 -0.4 0.5 0.4 0.0 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1
1.1 1.1 -1.0 1.1 0.4 0.4 -2.1 0.4 0.4 0.4 -1.7 0.4 1.1 1.1 -1.0 1.1 1.1 1.1 -1.0 1.1 1.1 1.1 -1.0 1.1
1.1 1.1 1.1 1.1 0.4 0.4 0.4 -0.7 0.4 0.5 0.4 -0.3 1.1 1.1 1.1 1.0 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G T A C G T A C G T A C G T A C G T A C G T
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
T A T C T G T T T G T T
A T A G A C A A A T A G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7
1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7
1.7 1.7 -0.4 1.7 1.1 1.1 -1.0 1.1 1.1 1.1 -1.0 1.1 1.7 1.7 -0.4 1.7 1.7 1.7 -0.4 1.7 1.7 1.7 -0.4 1.7
1.7 1.7 1.7 1.8 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.5 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
G A G C G G G U G G G U
U U U G U C U A U U U G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7
1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7
1.7 1.7 -0.4 1.7 1.1 1.1 -1.0 1.1 1.1 1.1 -1.0 1.1 1.7 1.7 -0.4 1.7 1.7 1.7 -0.4 1.7 1.7 1.7 -0.4 1.7
1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
U A U C U G U U U G U U
G U G G G C G A G U G G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7
1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7
1.7 1.7 -0.4 1.7 1.1 1.1 -1.0 1.1 1.1 1.1 -1.0 1.1 1.7 1.7 -0.4 1.7 1.7 1.7 -0.4 1.7 1.7 1.7 -0.4 1.7
1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7