#This table contains the terminal mismatch numbers that are used in exterior loops. #Data Arrangement: # 5' --> 3' # AX # UY # 3' <-- 5' # Y-> # ---------------------------- # (X) A C G U # | ---------------------------- # V # (A) -0.8 -1.0 -0.8 -1.0 # (C) -0.6 -0.7 -0.6 -0.7 # (G) -0.8 -1.0 -0.8 -1.0 # (U) -0.6 -0.8 -0.6 -0.8 #An energy of "." is "infinity," i.e. not allowed. # 5' --> 3' AX UY # 3' <-- 5' # Y # ---------------------------- A C G U M # ---------------------------- A -0.8 -1.0 -0.8 -1.0 -1.1 C -0.6 -0.7 -0.6 -0.7 -0.9 G -0.8 -1.0 -0.8 -1.0 -0.8 U -0.6 -0.8 -0.6 -0.8 -0.9 M -1.1 -1.3 -1.1 -1.3 -0.9 # 5' --> 3' CX GY # 3' <-- 5' # Y # ---------------------------- A C G U M # ---------------------------- A -1.5 -1.5 -1.4 -1.5 -1.8 C -1.0 -1.1 -1.0 -0.8 -1.3 G -1.4 -1.5 -1.6 -1.5 -1.7 U -1.0 -1.4 -1.0 -1.2 -1.3 M -1.8 -1.9 -1.7 -1.8 -1.8 # 5' --> 3' GX CY # 3' <-- 5' # Y # ---------------------------- A C G U M # ---------------------------- A -1.1 -1.5 -1.3 -1.5 -1.4 C -1.1 -0.7 -1.1 -0.5 -1.4 G -1.6 -1.5 -1.4 -1.5 -1.9 U -1.1 -1.0 -1.1 -0.7 -1.4 M -1.4 -1.8 -1.6 -1.8 -1.4 # 5' --> 3' GX UY # 3' <-- 5' # Y # ---------------------------- A C G U M # ---------------------------- A -0.3 -1.0 -0.8 -1.0 -0.6 C -0.6 -0.7 -0.6 -0.7 -0.9 G -0.6 -1.0 -0.8 -1.0 -0.9 U -0.6 -0.8 -0.6 -0.6 -0.9 M -0.6 -1.3 -1.1 -1.3 -0.6 # 5' --> 3' UX AY # 3' <-- 5' # Y # ---------------------------- A C G U M # ---------------------------- A -1.0 -0.8 -1.1 -0.8 -1.3 C -0.7 -0.6 -0.7 -0.5 -1.0 G -1.1 -0.8 -1.2 -0.8 -1.4 U -0.7 -0.6 -0.7 -0.5 -1.0 M -1.3 -1.1 -1.4 -1.1 -1.3 # 5' --> 3' UX GY # 3' <-- 5' # Y # ---------------------------- A C G U M # ---------------------------- A -1.0 -0.8 -1.1 -0.8 -1.3 C -0.7 -0.6 -0.7 -0.5 -1.0 G -0.5 -0.8 -0.8 -0.8 -1.2 U -0.7 -0.6 -0.7 -0.5 -1.0 M -1.3 -1.1 -1.4 -1.1 -1.3 # 5' --> 3' MX UY # 3' <-- 5' # Y # ---------------------------- A C G U M # ---------------------------- A -1.1 -1.3 -1.1 -1.3 -1.4 C -0.9 -1.0 -0.9 -1.0 -1.2 G -1.1 -1.3 -1.1 -1.3 -1.4 U -0.9 -1.1 -0.9 -1.1 -1.2 M -1.4 -1.6 -1.4 -1.6 -1.3 # 5' --> 3' UX MY # 3' <-- 5' # Y # ---------------------------- A C G U M # ---------------------------- A -1.3 -1.1 -1.4 -1.1 -1.7 C -1.0 -0.9 -1.0 -0.8 -1.3 G -1.4 -1.1 -1.5 -1.1 -1.7 U -1.0 -0.9 -1.0 -0.8 -1.3 M -1.6 -1.4 -1.7 -1.4 -1.6