#Data Arrangement: #For the 4x4 tables, each starting pair needs its own table. #This is the AA table: # 5' --> 3' # AX # UY # 3' <-- 5' # Y-> # ---------------------------- # (X) A C G U # | ---------------------------- # V # (A) . . . -0.9 # (C) . . -2.2 . # (G) . -2.1 . -0.6 # (U) -1.1 . -1.4 . #An energy of "." is "infinity," i.e. not allowed. # 5' --> 3' AX UY # 3' <-- 5' # Y # ---------------------------- A C G U M # ---------------------------- A . . . -0.9 . C . . -2.2 . . G . -2.1 . -0.4 . U -1.1 . -0.9 . -1.1 M . . . -0.7 . # 5' --> 3' CX GY # 3' <-- 5' # Y # ---------------------------- A C G U M # ---------------------------- A . . . -2.1 . C . . -3.3 . . G . -2.4 . -1.3 . U -2.1 . -1.8 . -1.6 M . . . -1.3 . # 5' --> 3' GX CY # 3' <-- 5' # Y # ---------------------------- A C G U M # ---------------------------- A . . . -2.4 . C . . -3.4 . . G . -3.3 . -1.8 . U -2.2 . -2.2 . -1.9 M . . . -1.8 . # 5' --> 3' GX UY # 3' <-- 5' # Y # ---------------------------- A C G U M # ---------------------------- A . . . -0.5 . C . . -2.2 . . G . -1.8 . -0.3 . U -0.9 . +0.7 . -0.6 M . . . -0.3 . # 5' --> 3' UX AY # 3' <-- 5' # Y # ---------------------------- A C G U M # ---------------------------- A . . . -1.3 . C . . -2.4 . . G . -2.1 . -0.4 . U -0.9 . -0.5 . -0.8 M . . . -0.7 . # 5' --> 3' UX GY # 3' <-- 5' # Y # ---------------------------- A C G U M # ---------------------------- A . . . -0.4 . C . . -1.8 . . G . -1.3 . -0.6 . U -0.4 . -0.3 . -0.0 M . . . -0.3 . # 5' --> 3' MX UY # 3' <-- 5' # Y # ---------------------------- A C G U M # ---------------------------- A . . . -0.8 . C . . -1.9 . . G . -1.6 . -0.0 . U -1.1 . -0.6 . -0.4 M . . . -0.1 . # 5' --> 3' UX MY # 3' <-- 5' # Y # ---------------------------- A C G U M # ---------------------------- A . . . -0.7 . C . . -1.8 . . G . -1.3 . -0.3 . U -0.7 . -0.3 . -0.1 M . . . 1.3 .