#Data tables for asymmetric interior loops of size 3
#enthalpy (energies) at 37 degrees for DNA
#Data Arrangement:
#For the 4x4 tables, each starting pair needs its own table.
#This is the AA table:
# 5' --> 3'
# X
# A A
# T T
# YA
# 3' <-- 5'
# Y->
# ----------------------------
# (X) A C G U
# | ----------------------------
# V
# (A) 31.8 31.8 29.6 31.8
# (C) 29.3 29.3 29.3 29.3
# (G) 20.7 20.7 20.7 20.7
# (U) 29.3 29.3 29.3 14.1
#An energy of "." is "infinity," i.e. not allowed.
# 5' --> 3'
X
A A
T T
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 31.8 31.8 29.6 31.8
C 29.3 29.3 29.3 29.3
G 20.7 20.7 20.7 20.7
U 29.3 29.3 29.3 14.1
# 5' --> 3'
X
A C
T G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.9 29.8 27.8 29.8
C 23.0 23.0 23.0 20.2
G 23.4 23.4 13.9 23.4
U 23.0 23.0 23.0 19.4
# 5' --> 3'
X
A G
T C
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.9 23.9 12.6 23.9
C 24.2 24.2 24.2 14.0
G 16.7 16.7 16.7 16.7
U 24.2 6.6 24.2 11.4
# 5' --> 3'
X
A T
T A
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.8 28.7 26.0 23.8
C 28.7 28.7 28.7 23.2
G 26.0 26.0 26.0 26.0
U 28.7 23.2 28.7 28.7
# 5' --> 3'
X
A G
T T
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.9 23.9 12.6 23.9
C 24.2 24.2 24.2 14.0
G 16.7 16.7 16.7 16.7
U 24.2 6.6 24.2 11.4
# 5' --> 3'
X
A T
T G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.9 29.8 27.8 29.8
C 23.0 23.0 23.0 20.2
G 23.4 23.4 13.9 23.4
U 23.0 23.0 23.0 19.4
# 5' --> 3'
X
A A
T T
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 31.8 20.4 29.6 20.4
C 29.3 33.6 29.3 17.3
G 20.7 20.4 20.5 20.4
U 29.3 22.4 29.3 14.1
# 5' --> 3'
X
A C
T G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 29.8 29.8 27.8 29.8
C 23.0 31.7 23.0 20.2
G 23.4 29.8 13.9 29.8
U 23.0 30.5 23.0 19.4
# 5' --> 3'
X
A G
T C
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.8 22.8 12.6 22.8
C 24.2 21.5 24.2 14.0
G 16.7 22.8 9.0 22.8
U 6.6 6.6 6.6 6.6
# 5' --> 3'
X
A T
T A
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.7 28.7 26.0 28.7
C 28.7 26.4 28.7 23.2
G 26.0 28.7 23.0 28.7
U 23.2 23.2 23.2 23.2
# 5' --> 3'
X
A G
T T
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.8 22.8 12.6 22.8
C 24.2 21.5 24.2 14.0
G 16.7 22.8 9.0 22.8
U 6.6 6.6 6.6 6.6
# 5' --> 3'
X
A T
T G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 29.8 29.8 27.8 29.8
C 23.0 31.7 23.0 20.2
G 23.4 29.8 13.9 29.8
U 23.0 30.5 23.0 19.4
# 5' --> 3'
X
A A
T T
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 29.6 29.6 29.6 29.6
C 29.3 29.3 29.3 29.3
G 20.7 20.5 20.5 20.5
U 29.3 29.3 29.3 14.1
# 5' --> 3'
X
A C
T G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 27.8 27.8 27.8 27.8
C 23.0 23.0 23.0 20.2
G 13.9 13.9 13.9 13.9
U 23.0 23.0 23.0 19.4
# 5' --> 3'
X
A G
T C
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 12.6 12.6 12.6 12.6
C 24.2 24.2 24.2 14.0
G 16.7 9.0 9.0 9.0
U 24.2 6.6 24.2 11.4
# 5' --> 3'
X
A T
T A
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 26.0 26.0 26.0 26.0
C 28.7 28.7 28.7 23.2
G 26.0 23.0 23.0 23.0
U 28.7 23.2 28.7 28.7
# 5' --> 3'
X
A G
T T
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 12.6 12.6 12.6 12.6
C 24.2 24.2 24.2 14.0
G 16.7 9.0 9.0 9.0
U 24.2 6.6 24.2 11.4
# 5' --> 3'
X
A T
T G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 27.8 27.8 27.8 27.8
C 23.0 23.0 23.0 20.2
G 13.9 13.9 13.9 13.9
U 23.0 23.0 23.0 19.4
# 5' --> 3'
X
A A
T T
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 31.8 20.4 29.6 20.4
C 17.3 17.3 17.3 17.3
G 20.7 20.4 20.5 20.4
U 14.1 14.1 14.1 14.1
# 5' --> 3'
X
A C
T G
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 29.8 29.8 27.8 29.8
C 20.2 20.2 20.2 20.2
G 23.4 29.8 13.9 29.8
U 19.4 19.4 19.4 19.4
# 5' --> 3'
X
A G
T C
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.8 22.8 12.6 22.8
C 14.0 14.0 14.0 14.0
G 16.7 22.8 9.0 22.8
U 11.4 6.6 11.4 11.4
# 5' --> 3'
X
A T
T A
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.7 28.7 26.0 28.7
C 23.2 23.2 23.2 23.2
G 26.0 28.7 23.0 28.7
U 28.7 23.2 28.7 24.6
# 5' --> 3'
X
A G
T T
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.8 22.8 12.6 22.8
C 14.0 14.0 14.0 14.0
G 16.7 22.8 9.0 22.8
U 11.4 6.6 11.4 11.4
# 5' --> 3'
X
A T
T G
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 29.8 29.8 27.8 29.8
C 20.2 20.2 20.2 20.2
G 23.4 29.8 13.9 29.8
U 19.4 19.4 19.4 19.4
# 5' --> 3'
X
C A
G T
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.9 28.9 30.2 28.9
C 28.5 28.5 28.5 19.0
G 25.8 25.8 17.8 25.8
U 28.5 21.9 28.5 19.6
# 5' --> 3'
X
C C
G G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 18.3 23.5 20.2 23.5
C 28.2 28.2 28.2 20.8
G 22.8 22.8 18.0 22.8
U 28.2 19.4 28.2 21.0
# 5' --> 3'
X
C G
G C
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.9 22.9 25.0 22.9
C 24.0 24.0 24.0 20.5
G 25.0 25.0 25.0 25.0
U 24.0 20.5 24.0 16.2
# 5' --> 3'
X
C T
G A
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.9 24.2 16.7 24.2
C 22.8 22.8 22.8 6.6
G 12.6 12.6 9.0 12.6
U 22.8 14.0 22.8 11.4
# 5' --> 3'
X
C G
G T
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.9 22.9 25.0 22.9
C 24.0 24.0 24.0 20.5
G 25.0 25.0 25.0 25.0
U 24.0 20.5 24.0 16.2
# 5' --> 3'
X
C T
G G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 18.3 23.5 20.2 23.5
C 28.2 28.2 28.2 20.8
G 22.8 22.8 18.0 22.8
U 28.2 19.4 28.2 21.0
# 5' --> 3'
X
C A
G T
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.9 32.1 30.2 32.1
C 28.5 24.8 28.5 19.0
G 25.8 32.1 17.8 32.1
U 21.9 21.9 21.9 19.6
# 5' --> 3'
X
C C
G G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.5 23.5 20.2 23.5
C 28.2 26.4 28.2 20.8
G 22.8 23.5 18.0 23.5
U 19.4 19.4 19.4 19.4
# 5' --> 3'
X
C G
G C
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.9 24.0 25.0 24.0
C 24.0 23.0 24.0 20.5
G 25.0 24.0 19.0 24.0
U 20.5 20.5 20.5 16.2
# 5' --> 3'
X
C T
G A
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 24.2 24.2 16.7 24.2
C 22.8 21.5 22.8 6.6
G 12.6 24.2 9.0 24.2
U 14.0 14.0 14.0 11.4
# 5' --> 3'
X
C G
G T
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.9 24.0 25.0 24.0
C 24.0 23.0 24.0 20.5
G 25.0 24.0 19.0 24.0
U 20.5 20.5 20.5 16.2
# 5' --> 3'
X
C T
G G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.5 23.5 20.2 23.5
C 28.2 26.4 28.2 20.8
G 22.8 23.5 18.0 23.5
U 19.4 19.4 19.4 19.4
# 5' --> 3'
X
C A
G T
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 30.2 30.2 30.2 30.2
C 28.5 28.5 28.5 19.0
G 17.8 17.8 17.8 17.8
U 28.5 21.9 28.5 19.6
# 5' --> 3'
X
C C
G G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 20.2 20.2 20.2 20.2
C 28.2 28.2 28.2 20.8
G 18.0 18.0 18.0 18.0
U 28.2 19.4 28.2 21.0
# 5' --> 3'
X
C G
G C
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 25.0 25.0 25.0 25.0
C 24.0 24.0 24.0 20.5
G 25.0 19.0 19.0 19.0
U 24.0 20.5 24.0 16.2
# 5' --> 3'
X
C T
G A
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 16.7 16.7 16.7 16.7
C 22.8 22.8 22.8 6.6
G 9.0 9.0 9.0 9.0
U 22.8 14.0 22.8 11.4
# 5' --> 3'
X
C G
G T
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 25.0 25.0 25.0 25.0
C 24.0 24.0 24.0 20.5
G 25.0 19.0 19.0 19.0
U 24.0 20.5 24.0 16.2
# 5' --> 3'
X
C T
G G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 20.2 20.2 20.2 20.2
C 28.2 28.2 28.2 20.8
G 18.0 18.0 18.0 18.0
U 28.2 19.4 28.2 21.0
# 5' --> 3'
X
C A
G T
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.9 32.1 30.2 32.1
C 19.0 19.0 19.0 19.0
G 25.8 32.1 17.8 32.1
U 19.6 19.6 19.6 19.6
# 5' --> 3'
X
C C
G G
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.5 23.5 20.2 23.5
C 20.8 20.8 20.8 20.8
G 22.8 23.5 18.0 23.5
U 21.0 21.0 21.0 21.0
# 5' --> 3'
X
C G
G C
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.9 24.0 25.0 24.0
C 20.5 20.5 20.5 20.5
G 25.0 24.0 19.0 24.0
U 16.2 16.2 16.2 16.2
# 5' --> 3'
X
C T
G A
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 24.2 24.2 16.7 24.2
C 6.6 6.6 6.6 6.6
G 12.6 24.2 9.0 24.2
U 11.4 11.4 11.4 11.4
# 5' --> 3'
X
C G
G T
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.9 24.0 25.0 24.0
C 20.5 20.5 20.5 20.5
G 25.0 24.0 19.0 24.0
U 16.2 16.2 16.2 16.2
# 5' --> 3'
X
C T
G G
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.5 23.5 20.2 23.5
C 20.8 20.8 20.8 20.8
G 22.8 23.5 18.0 23.5
U 21.0 21.0 21.0 21.0
# 5' --> 3'
X
G A
C T
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 17.5 17.5 17.5 17.5
C 23.1 23.1 23.1 23.1
G 25.8 25.8 25.8 25.8
U 23.1 23.1 23.1 8.9
# 5' --> 3'
X
G C
C G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 21.5 21.5 21.3 21.5
C 22.8 22.8 22.8 22.8
G 21.3 21.3 16.1 21.3
U 22.8 22.8 22.8 22.8
# 5' --> 3'
X
G G
C C
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 18.3 18.3 22.8 18.3
C 23.5 23.5 23.5 23.5
G 20.2 20.2 20.2 20.2
U 23.5 23.5 23.5 23.5
# 5' --> 3'
X
G T
C A
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.9 23.0 23.4 23.0
C 29.8 29.8 29.8 29.8
G 27.8 27.8 13.9 27.8
U 29.8 20.2 29.8 19.4
# 5' --> 3'
X
G G
C T
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 18.3 18.3 22.8 18.3
C 23.5 23.5 23.5 23.5
G 20.2 20.2 20.2 20.2
U 23.5 23.5 23.5 23.5
# 5' --> 3'
X
G T
C G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 21.5 21.5 21.3 21.5
C 22.8 22.8 22.8 22.8
G 21.3 21.3 16.1 21.3
U 22.8 22.8 22.8 22.8
# 5' --> 3'
X
G A
C T
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 17.5 32.1 30.2 32.1
C 23.1 31.8 23.1 18.5
G 25.8 32.1 22.3 32.1
U 23.1 22.6 23.1 8.9
# 5' --> 3'
X
G C
C G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 21.5 22.8 21.3 22.8
C 22.8 24.9 22.8 18.3
G 21.3 22.8 16.1 22.8
U 22.8 18.3 22.8 18.3
# 5' --> 3'
X
G G
C C
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 18.3 28.2 22.8 28.2
C 23.5 26.4 23.5 19.4
G 20.2 28.2 18.0 28.2
U 23.5 20.8 23.5 21.0
# 5' --> 3'
X
G T
C A
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.0 23.0 23.4 23.0
C 29.8 31.7 29.8 30.5
G 27.8 23.0 13.9 23.0
U 20.2 20.2 20.2 20.2
# 5' --> 3'
X
G G
C T
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 18.3 28.2 22.8 28.2
C 23.5 26.4 23.5 19.4
G 20.2 28.2 18.0 28.2
U 23.5 20.8 23.5 21.0
# 5' --> 3'
X
G T
C G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 21.5 22.8 21.3 22.8
C 22.8 24.9 22.8 18.3
G 21.3 22.8 16.1 22.8
U 22.8 18.3 22.8 18.3
# 5' --> 3'
X
G A
C T
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 30.2 30.2 30.2 30.2
C 23.1 23.1 23.1 23.1
G 25.8 22.3 22.3 22.3
U 23.1 23.1 23.1 8.9
# 5' --> 3'
X
G C
C G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 21.3 21.3 21.3 21.3
C 22.8 22.8 22.8 22.8
G 16.1 16.1 16.1 16.1
U 22.8 22.8 22.8 22.8
# 5' --> 3'
X
G G
C C
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.8 22.8 22.8 22.8
C 23.5 23.5 23.5 23.5
G 20.2 18.0 18.0 18.0
U 23.5 23.5 23.5 23.5
# 5' --> 3'
X
G T
C A
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.4 23.4 23.4 23.4
C 29.8 29.8 29.8 29.8
G 13.9 13.9 13.9 13.9
U 29.8 20.2 29.8 19.4
# 5' --> 3'
X
G G
C T
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.8 22.8 22.8 22.8
C 23.5 23.5 23.5 23.5
G 20.2 18.0 18.0 18.0
U 23.5 23.5 23.5 23.5
# 5' --> 3'
X
G T
C G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 21.3 21.3 21.3 21.3
C 22.8 22.8 22.8 22.8
G 16.1 16.1 16.1 16.1
U 22.8 22.8 22.8 22.8
# 5' --> 3'
X
G A
C T
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 17.5 32.1 30.2 32.1
C 23.1 18.5 23.1 18.5
G 25.8 32.1 22.3 32.1
U 8.9 8.9 8.9 8.9
# 5' --> 3'
X
G C
C G
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 21.5 22.8 21.3 22.8
C 22.8 18.3 22.8 18.3
G 21.3 22.8 16.1 22.8
U 22.8 18.3 22.8 19.2
# 5' --> 3'
X
G G
C C
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 18.3 28.2 22.8 28.2
C 23.5 19.4 23.5 19.4
G 20.2 28.2 18.0 28.2
U 23.5 21.0 23.5 21.0
# 5' --> 3'
X
G T
C A
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.0 23.0 23.4 23.0
C 29.8 30.5 29.8 30.5
G 27.8 23.0 13.9 23.0
U 19.4 19.4 19.4 19.4
# 5' --> 3'
X
G G
C T
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 18.3 28.2 22.8 28.2
C 23.5 19.4 23.5 19.4
G 20.2 28.2 18.0 28.2
U 23.5 21.0 23.5 21.0
# 5' --> 3'
X
G T
C G
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 21.5 22.8 21.3 22.8
C 22.8 18.3 22.8 18.3
G 21.3 22.8 16.1 22.8
U 22.8 18.3 22.8 19.2
# 5' --> 3'
X
T A
A T
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 31.0 31.0 30.8 31.0
C 33.2 33.2 33.2 21.4
G 30.8 30.8 30.8 30.8
U 33.2 21.4 33.2 25.1
# 5' --> 3'
X
T C
A G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 17.5 17.5 25.8 17.5
C 32.1 32.1 32.1 32.1
G 30.2 30.2 22.3 30.2
U 32.1 18.5 32.1 8.9
# 5' --> 3'
X
T G
A C
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.9 28.9 25.8 28.9
C 32.1 32.1 32.1 21.9
G 30.2 30.2 17.8 30.2
U 32.1 19.0 32.1 19.6
# 5' --> 3'
X
T T
A A
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 31.8 29.3 20.7 29.3
C 20.4 20.4 20.4 22.4
G 29.6 29.6 20.5 29.6
U 20.4 17.3 20.4 14.1
# 5' --> 3'
X
T G
A T
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.9 28.9 25.8 28.9
C 32.1 32.1 32.1 21.9
G 30.2 30.2 17.8 30.2
U 32.1 19.0 32.1 19.6
# 5' --> 3'
X
T T
A G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 17.5 17.5 25.8 17.5
C 32.1 32.1 32.1 32.1
G 30.2 30.2 22.3 30.2
U 32.1 18.5 32.1 8.9
# 5' --> 3'
X
T A
A T
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 31.0 33.2 30.8 33.2
C 33.2 36.3 33.2 21.4
G 30.8 33.2 27.3 33.2
U 21.4 21.4 21.4 21.4
# 5' --> 3'
X
T C
A G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 17.5 23.1 25.8 23.1
C 32.1 31.8 32.1 31.8
G 30.2 23.1 22.3 23.1
U 18.5 18.5 18.5 8.9
# 5' --> 3'
X
T G
A C
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.5 28.5 25.8 28.5
C 32.1 24.8 32.1 21.9
G 30.2 28.5 17.8 28.5
U 19.0 19.0 19.0 19.6
# 5' --> 3'
X
T T
A A
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 29.3 29.3 20.7 29.3
C 20.4 33.6 20.4 22.4
G 29.6 29.3 20.5 29.3
U 17.3 17.3 17.3 14.1
# 5' --> 3'
X
T G
A T
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.5 28.5 25.8 28.5
C 32.1 24.8 32.1 21.9
G 30.2 28.5 17.8 28.5
U 19.0 19.0 19.0 19.6
# 5' --> 3'
X
T T
A G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 17.5 23.1 25.8 23.1
C 32.1 31.8 32.1 31.8
G 30.2 23.1 22.3 23.1
U 18.5 18.5 18.5 8.9
# 5' --> 3'
X
T A
A T
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 30.8 30.8 30.8 30.8
C 33.2 33.2 33.2 21.4
G 30.8 27.3 27.3 27.3
U 33.2 21.4 33.2 25.1
# 5' --> 3'
X
T C
A G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 25.8 25.8 25.8 25.8
C 32.1 32.1 32.1 32.1
G 22.3 22.3 22.3 22.3
U 32.1 18.5 32.1 8.9
# 5' --> 3'
X
T G
A C
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 25.8 25.8 25.8 25.8
C 32.1 32.1 32.1 21.9
G 17.8 17.8 17.8 17.8
U 32.1 19.0 32.1 19.6
# 5' --> 3'
X
T T
A A
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 20.7 20.7 20.7 20.7
C 20.4 20.4 20.4 22.4
G 20.5 20.5 20.5 20.5
U 20.4 17.3 20.4 14.1
# 5' --> 3'
X
T G
A T
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 25.8 25.8 25.8 25.8
C 32.1 32.1 32.1 21.9
G 17.8 17.8 17.8 17.8
U 32.1 19.0 32.1 19.6
# 5' --> 3'
X
T T
A G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 25.8 25.8 25.8 25.8
C 32.1 32.1 32.1 32.1
G 22.3 22.3 22.3 22.3
U 32.1 18.5 32.1 8.9
# 5' --> 3'
X
T A
A T
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 31.0 33.2 30.8 33.2
C 21.4 21.4 21.4 21.4
G 30.8 33.2 27.3 33.2
U 25.1 21.4 25.1 25.1
# 5' --> 3'
X
T C
A G
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 17.5 23.1 25.8 23.1
C 32.1 22.6 32.1 22.6
G 30.2 23.1 22.3 23.1
U 8.9 8.9 8.9 8.9
# 5' --> 3'
X
T G
A C
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.5 28.5 25.8 28.5
C 21.9 21.9 21.9 21.9
G 30.2 28.5 17.8 28.5
U 19.6 19.6 19.6 19.6
# 5' --> 3'
X
T T
A A
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 29.3 29.3 20.7 29.3
C 22.4 22.4 22.4 22.4
G 29.6 29.3 20.5 29.3
U 14.1 14.1 14.1 14.1
# 5' --> 3'
X
T G
A T
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.5 28.5 25.8 28.5
C 21.9 21.9 21.9 21.9
G 30.2 28.5 17.8 28.5
U 19.6 19.6 19.6 19.6
# 5' --> 3'
X
T T
A G
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 17.5 23.1 25.8 23.1
C 32.1 22.6 32.1 22.6
G 30.2 23.1 22.3 23.1
U 8.9 8.9 8.9 8.9
# 5' --> 3'
X
G A
T T
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 17.5 17.5 17.5 17.5
C 23.1 23.1 23.1 23.1
G 25.8 25.8 25.8 25.8
U 23.1 23.1 23.1 8.9
# 5' --> 3'
X
G C
T G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 21.5 21.5 21.3 21.5
C 22.8 22.8 22.8 22.8
G 21.3 21.3 16.1 21.3
U 22.8 22.8 22.8 22.8
# 5' --> 3'
X
G G
T C
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 18.3 18.3 22.8 18.3
C 23.5 23.5 23.5 23.5
G 20.2 20.2 20.2 20.2
U 23.5 23.5 23.5 23.5
# 5' --> 3'
X
G T
T A
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.9 23.0 23.4 23.0
C 29.8 29.8 29.8 29.8
G 27.8 27.8 13.9 27.8
U 29.8 20.2 29.8 19.4
# 5' --> 3'
X
G G
T T
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 18.3 18.3 22.8 18.3
C 23.5 23.5 23.5 23.5
G 20.2 20.2 20.2 20.2
U 23.5 23.5 23.5 23.5
# 5' --> 3'
X
G T
T G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 21.5 21.5 21.3 21.5
C 22.8 22.8 22.8 22.8
G 21.3 21.3 16.1 21.3
U 22.8 22.8 22.8 22.8
# 5' --> 3'
X
G A
T T
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 17.5 32.1 30.2 32.1
C 23.1 31.8 23.1 18.5
G 25.8 32.1 22.3 32.1
U 23.1 22.6 23.1 8.9
# 5' --> 3'
X
G C
T G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 21.5 22.8 21.3 22.8
C 22.8 24.9 22.8 18.3
G 21.3 22.8 16.1 22.8
U 22.8 18.3 22.8 18.3
# 5' --> 3'
X
G G
T C
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 18.3 28.2 22.8 28.2
C 23.5 26.4 23.5 19.4
G 20.2 28.2 18.0 28.2
U 23.5 20.8 23.5 21.0
# 5' --> 3'
X
G T
T A
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.0 23.0 23.4 23.0
C 29.8 31.7 29.8 30.5
G 27.8 23.0 13.9 23.0
U 20.2 20.2 20.2 20.2
# 5' --> 3'
X
G G
T T
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 18.3 28.2 22.8 28.2
C 23.5 26.4 23.5 19.4
G 20.2 28.2 18.0 28.2
U 23.5 20.8 23.5 21.0
# 5' --> 3'
X
G T
T G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 21.5 22.8 21.3 22.8
C 22.8 24.9 22.8 18.3
G 21.3 22.8 16.1 22.8
U 22.8 18.3 22.8 18.3
# 5' --> 3'
X
G A
T T
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 30.2 30.2 30.2 30.2
C 23.1 23.1 23.1 23.1
G 25.8 22.3 22.3 22.3
U 23.1 23.1 23.1 8.9
# 5' --> 3'
X
G C
T G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 21.3 21.3 21.3 21.3
C 22.8 22.8 22.8 22.8
G 16.1 16.1 16.1 16.1
U 22.8 22.8 22.8 22.8
# 5' --> 3'
X
G G
T C
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.8 22.8 22.8 22.8
C 23.5 23.5 23.5 23.5
G 20.2 18.0 18.0 18.0
U 23.5 23.5 23.5 23.5
# 5' --> 3'
X
G T
T A
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.4 23.4 23.4 23.4
C 29.8 29.8 29.8 29.8
G 13.9 13.9 13.9 13.9
U 29.8 20.2 29.8 19.4
# 5' --> 3'
X
G G
T T
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.8 22.8 22.8 22.8
C 23.5 23.5 23.5 23.5
G 20.2 18.0 18.0 18.0
U 23.5 23.5 23.5 23.5
# 5' --> 3'
X
G T
T G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 21.3 21.3 21.3 21.3
C 22.8 22.8 22.8 22.8
G 16.1 16.1 16.1 16.1
U 22.8 22.8 22.8 22.8
# 5' --> 3'
X
G A
T T
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 17.5 32.1 30.2 32.1
C 23.1 18.5 23.1 18.5
G 25.8 32.1 22.3 32.1
U 8.9 8.9 8.9 8.9
# 5' --> 3'
X
G C
T G
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 21.5 22.8 21.3 22.8
C 22.8 18.3 22.8 18.3
G 21.3 22.8 16.1 22.8
U 22.8 18.3 22.8 19.2
# 5' --> 3'
X
G G
T C
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 18.3 28.2 22.8 28.2
C 23.5 19.4 23.5 19.4
G 20.2 28.2 18.0 28.2
U 23.5 21.0 23.5 21.0
# 5' --> 3'
X
G T
T A
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.0 23.0 23.4 23.0
C 29.8 30.5 29.8 30.5
G 27.8 23.0 13.9 23.0
U 19.4 19.4 19.4 19.4
# 5' --> 3'
X
G G
T T
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 18.3 28.2 22.8 28.2
C 23.5 19.4 23.5 19.4
G 20.2 28.2 18.0 28.2
U 23.5 21.0 23.5 21.0
# 5' --> 3'
X
G T
T G
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 21.5 22.8 21.3 22.8
C 22.8 18.3 22.8 18.3
G 21.3 22.8 16.1 22.8
U 22.8 18.3 22.8 19.2
# 5' --> 3'
X
T A
G T
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.9 28.9 30.2 28.9
C 28.5 28.5 28.5 19.0
G 25.8 25.8 17.8 25.8
U 28.5 21.9 28.5 19.6
# 5' --> 3'
X
T C
G G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 18.3 23.5 20.2 23.5
C 28.2 28.2 28.2 20.8
G 22.8 22.8 18.0 22.8
U 28.2 19.4 28.2 21.0
# 5' --> 3'
X
T G
G C
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.9 22.9 25.0 22.9
C 24.0 24.0 24.0 20.5
G 25.0 25.0 25.0 25.0
U 24.0 20.5 24.0 16.2
# 5' --> 3'
X
T T
G A
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.9 24.2 16.7 24.2
C 22.8 22.8 22.8 6.6
G 12.6 12.6 9.0 12.6
U 22.8 14.0 22.8 11.4
# 5' --> 3'
X
T G
G T
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.9 22.9 25.0 22.9
C 24.0 24.0 24.0 20.5
G 25.0 25.0 25.0 25.0
U 24.0 20.5 24.0 16.2
# 5' --> 3'
X
T T
G G
YA
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 18.3 23.5 20.2 23.5
C 28.2 28.2 28.2 20.8
G 22.8 22.8 18.0 22.8
U 28.2 19.4 28.2 21.0
# 5' --> 3'
X
T A
G T
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.9 32.1 30.2 32.1
C 28.5 24.8 28.5 19.0
G 25.8 32.1 17.8 32.1
U 21.9 21.9 21.9 19.6
# 5' --> 3'
X
T C
G G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.5 23.5 20.2 23.5
C 28.2 26.4 28.2 20.8
G 22.8 23.5 18.0 23.5
U 19.4 19.4 19.4 19.4
# 5' --> 3'
X
T G
G C
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.9 24.0 25.0 24.0
C 24.0 23.0 24.0 20.5
G 25.0 24.0 19.0 24.0
U 20.5 20.5 20.5 16.2
# 5' --> 3'
X
T T
G A
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 24.2 24.2 16.7 24.2
C 22.8 21.5 22.8 6.6
G 12.6 24.2 9.0 24.2
U 14.0 14.0 14.0 11.4
# 5' --> 3'
X
T G
G T
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.9 24.0 25.0 24.0
C 24.0 23.0 24.0 20.5
G 25.0 24.0 19.0 24.0
U 20.5 20.5 20.5 16.2
# 5' --> 3'
X
T T
G G
YC
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.5 23.5 20.2 23.5
C 28.2 26.4 28.2 20.8
G 22.8 23.5 18.0 23.5
U 19.4 19.4 19.4 19.4
# 5' --> 3'
X
T A
G T
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 30.2 30.2 30.2 30.2
C 28.5 28.5 28.5 19.0
G 17.8 17.8 17.8 17.8
U 28.5 21.9 28.5 19.6
# 5' --> 3'
X
T C
G G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 20.2 20.2 20.2 20.2
C 28.2 28.2 28.2 20.8
G 18.0 18.0 18.0 18.0
U 28.2 19.4 28.2 21.0
# 5' --> 3'
X
T G
G C
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 25.0 25.0 25.0 25.0
C 24.0 24.0 24.0 20.5
G 25.0 19.0 19.0 19.0
U 24.0 20.5 24.0 16.2
# 5' --> 3'
X
T T
G A
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 16.7 16.7 16.7 16.7
C 22.8 22.8 22.8 6.6
G 9.0 9.0 9.0 9.0
U 22.8 14.0 22.8 11.4
# 5' --> 3'
X
T G
G T
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 25.0 25.0 25.0 25.0
C 24.0 24.0 24.0 20.5
G 25.0 19.0 19.0 19.0
U 24.0 20.5 24.0 16.2
# 5' --> 3'
X
T T
G G
YG
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 20.2 20.2 20.2 20.2
C 28.2 28.2 28.2 20.8
G 18.0 18.0 18.0 18.0
U 28.2 19.4 28.2 21.0
# 5' --> 3'
X
T A
G T
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 28.9 32.1 30.2 32.1
C 19.0 19.0 19.0 19.0
G 25.8 32.1 17.8 32.1
U 19.6 19.6 19.6 19.6
# 5' --> 3'
X
T C
G G
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.5 23.5 20.2 23.5
C 20.8 20.8 20.8 20.8
G 22.8 23.5 18.0 23.5
U 21.0 21.0 21.0 21.0
# 5' --> 3'
X
T G
G C
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.9 24.0 25.0 24.0
C 20.5 20.5 20.5 20.5
G 25.0 24.0 19.0 24.0
U 16.2 16.2 16.2 16.2
# 5' --> 3'
X
T T
G A
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 24.2 24.2 16.7 24.2
C 6.6 6.6 6.6 6.6
G 12.6 24.2 9.0 24.2
U 11.4 11.4 11.4 11.4
# 5' --> 3'
X
T G
G T
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 22.9 24.0 25.0 24.0
C 20.5 20.5 20.5 20.5
G 25.0 24.0 19.0 24.0
U 16.2 16.2 16.2 16.2
# 5' --> 3'
X
T T
G G
YT
# 3' <-- 5'
# Y
# ----------------------------
A C G U
# ----------------------------
A 23.5 23.5 20.2 23.5
C 20.8 20.8 20.8 20.8
G 22.8 23.5 18.0 23.5
U 21.0 21.0 21.0 21.0