|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
RNAstructure is a complete software package for RNA secondary structure prediction and analysis.
NAPSS source code is available for local compilation. NAPSS can also be found in RNAstructure (above).
OligoWalk can be used for siRNA design. Source code is also downloadable for local compilation.
Note: We currently are aware that the web server does not work with the Firefox browser and we are working on this issue.
PARTS source code for local compilation. PARTS finds a secondary structure common to two sequences and uses a partition function to calculate probabilities for each base pair in common secondary structures. PARTS can also be found in RNAstructure (above).