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RNAstructure Command Line Help

ct2dot is used to generate a dot bracket file from a single structure within a CT file. The CT structure can be regenerated from the dot bracket structure by using the dot2ct interface.

USAGE: ct2dot <ct file> <structure number> <bracket file>

Required parameters:

<ct file> The name of a CT file containing the structure to convert.
<structure number> The number, one-indexed, of the structure to convert in the CT file.
<bracket file> The name of a dot bracket file to which output will be written.

Options that do not require added values:

-h, -H, --help Display the usage details message.

Options that require added values:



  1. Reuter, J.S. and Mathews, D.H.
    "RNAstructure: software for RNA secondary structure prediction and analysis."
    BMC Bioinformatics, 11:129. (2010).