Welcome to the Dynalign Web Server
The Dynalign server takes two nucleic acid sequences, either RNA or DNA, and determines common secondary structures.
Additionally, it creates an alignment file of the sequences.
Both sequences, as well as the resulting alignment, can be restrained using constraint files.
Note that if an error is encountered in Dynalign calculation, it may still be possible to fold one or both component sequences independently without errors.
If you plan to leave this page while waiting for calculations to complete, please make sure you have entered a valid email address below. Leaving this page without entering a valid email address will render results inaccessible.
If you need specific help using the Dynalign server, please click here.