RNAstructure Classes  Version 6.1
ProbScan.cpp File Reference
#include "../src/pfunction.h"
#include "ProbScan.h"
#include "../src/structure.h"
#include <algorithm>
#include <functional>
#include <numeric>
#include <iomanip>
#include <assert.h>
#include <cmath>

Functions

basestack_t basestack (double p, int i, int j, int k, int l)
 
PFPRECISION prev_val (int index, int offset, vector< vector< PFPRECISION > > &arr)
 
hairpin_t hairpin (double p, int i, int j)
 
internal_loop_t internal_loop (double p, int i, int j, int k, int l)
 
multibranch_loop_t multibranch_loop (int i, int j)
 
void add_branch (multibranch_loop_t &mb, int k, int l)
 
void show_hairpins (vector< hairpin_t > hairpins)
 
void show_internal_loops (vector< internal_loop_t > internals)
 
void show_bulge_loops (vector< internal_loop_t > internals)
 
void show_stacks (vector< basestack_t > stacks)
 
void show_mb_element_array (vector< mb_element > e)
 
void show_mbl (multibranch_loop_t mb)
 

Variables

static const int inc [6][6] ={{0,0,0,0,0,0},{0,0,0,0,1,0},{0,0,0,1,0,0},{0,0,1,0,1,0},{0,1,0,1,0,0},{0,0,0,0,0,0}}
 
static const int max_internal_loop =30
 

Function Documentation

void add_branch ( multibranch_loop_t mb,
int  k,
int  l 
)
basestack_t basestack ( double  p,
int  i,
int  j,
int  k,
int  l 
)
hairpin_t hairpin ( double  p,
int  i,
int  j 
)
internal_loop_t internal_loop ( double  p,
int  i,
int  j,
int  k,
int  l 
)
multibranch_loop_t multibranch_loop ( int  i,
int  j 
)
PFPRECISION prev_val ( int  index,
int  offset,
vector< vector< PFPRECISION > > &  arr 
)
void show_bulge_loops ( vector< internal_loop_t internals)
void show_hairpins ( vector< hairpin_t hairpins)
void show_internal_loops ( vector< internal_loop_t internals)
void show_mb_element_array ( vector< mb_element >  e)
void show_mbl ( multibranch_loop_t  mb)
void show_stacks ( vector< basestack_t stacks)

Variable Documentation

const int inc[6][6] ={{0,0,0,0,0,0},{0,0,0,0,1,0},{0,0,0,1,0,0},{0,0,1,0,1,0},{0,1,0,1,0,0},{0,0,0,0,0,0}}
static
const int max_internal_loop =30
static