Data table for symetric interior loops of size 2 Free energies at 37 degrees for DNA Data Arrangement: Y ------------------ (X) A C G T ------------------ 5' --> 3' X A A U U Y 3' <-- 5' (A) . . . . (C) . . . . (G) . . . . (U) . . . . Y Y Y Y Y Y ------------------ ------------------ ------------------ ------------------ ------------------ ------------------ A C G T A C G T A C G T A C G T A C G T A C G T ------------------ ------------------ ------------------ ------------------ ------------------ ------------------ 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' X X X X X X A A A C A G A T A G A T T T T G T C T A T T T G Y Y Y Y Y Y 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 -0.4 1.7 1.1 1.1 -1.0 1.1 1.1 1.1 -1.0 1.1 1.7 1.7 -0.4 1.7 1.7 1.7 -0.4 1.7 1.7 1.7 -0.4 1.7 1.7 1.7 1.7 1.5 1.1 1.1 1.1 1.0 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.2 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 Y Y Y Y Y Y ------------------ ------------------ ------------------ ------------------ ------------------ ------------------ A C G T A C G T A C G T A C G T A C G T A C G T ------------------ ------------------ ------------------ ------------------ ------------------ ------------------ 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' X X X X X X C A C C C G C T C G C T G T G G G C G A G T G G Y Y Y Y Y Y 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 1.1 1.1 1.1 1.1 0.4 -0.4 0.4 0.4 1.1 0.4 0.4 0.4 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 0.3 0.5 0.4 0.5 0.4 0.4 0.4 0.4 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 -1.0 1.1 -0.1 0.4 -1.7 0.4 0.4 0.4 -1.4 0.4 1.1 1.1 -1.0 1.1 1.1 1.1 -1.0 1.1 1.1 1.1 -1.0 1.1 1.1 1.1 1.1 1.1 0.4 0.0 0.4 -0.3 0.4 0.4 0.4 0.4 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 Y Y Y Y Y Y ------------------ ------------------ ------------------ ------------------ ------------------ ------------------ A C G T A C G T A C G T A C G T A C G T A C G T ------------------ ------------------ ------------------ ------------------ ------------------ ------------------ 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' X X X X X X G A G C G G G T G G G T C T C G C C C A C T C G Y Y Y Y Y Y 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 1.1 1.1 1.1 1.1 0.8 0.4 0.4 0.4 0.4 0.3 -0.1 0.4 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 0.4 0.4 0.4 0.4 -0.4 0.5 0.4 0.0 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 -1.0 1.1 0.4 0.4 -2.1 0.4 0.4 0.4 -1.7 0.4 1.1 1.1 -1.0 1.1 1.1 1.1 -1.0 1.1 1.1 1.1 -1.0 1.1 1.1 1.1 1.1 1.1 0.4 0.4 0.4 -0.7 0.4 0.5 0.4 -0.3 1.1 1.1 1.1 1.0 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 Y Y Y Y Y Y ------------------ ------------------ ------------------ ------------------ ------------------ ------------------ A C G T A C G T A C G T A C G T A C G T A C G T ------------------ ------------------ ------------------ ------------------ ------------------ ------------------ 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' X X X X X X T A T C T G T T T G T T A T A G A C A A A T A G Y Y Y Y Y Y 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 -0.4 1.7 1.1 1.1 -1.0 1.1 1.1 1.1 -1.0 1.1 1.7 1.7 -0.4 1.7 1.7 1.7 -0.4 1.7 1.7 1.7 -0.4 1.7 1.7 1.7 1.7 1.8 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.5 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 Y Y Y Y Y Y ------------------ ------------------ ------------------ ------------------ ------------------ ------------------ A C G U A C G U A C G U A C G U A C G U A C G U ------------------ ------------------ ------------------ ------------------ ------------------ ------------------ 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' X X X X X X G A G C G G G U G G G U U U U G U C U A U U U G Y Y Y Y Y Y 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 -0.4 1.7 1.1 1.1 -1.0 1.1 1.1 1.1 -1.0 1.1 1.7 1.7 -0.4 1.7 1.7 1.7 -0.4 1.7 1.7 1.7 -0.4 1.7 1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 Y Y Y Y Y Y ------------------ ------------------ ------------------ ------------------ ------------------ ------------------ A C G U A C G U A C G U A C G U A C G U A C G U ------------------ ------------------ ------------------ ------------------ ------------------ ------------------ 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' X X X X X X U A U C U G U U U G U U G U G G G C G A G U G G Y Y Y Y Y Y 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 -0.4 1.7 1.1 1.1 -1.0 1.1 1.1 1.1 -1.0 1.1 1.7 1.7 -0.4 1.7 1.7 1.7 -0.4 1.7 1.7 1.7 -0.4 1.7 1.7 1.7 1.7 1.7 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7